Rmu_sc0000405.1_g000024

Translocon-associated protein subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000405.1
N/A
Physical Location & Seq
Forward (+)
113182 .. 117407
4226 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1236 bp
atgcagcgtccactatgtccagtacctgtgctgcaagagccctcattctcatctccaccaactgctcataaacctcatccttacccttgcgaggacagaaatgacgacccggcagaattgaacttgatgaaattttcagctctcaaatcaaagccaagcatagaggcgagctccattggtgaggggcagcccgaaaacccttggaccggtcacagtttcggcagagagaaatgttgtgggagtagcatacaattgagggatttgaggccgcttcggctccgcaatggtcacagagttgtgagcagcctcctactcagtgctgaaattggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagagtcacagacccatacaaaattcaatggggatcttggattagagatgataggcacagaaggtggcattatatcccactcttttgaattggaggccaagacgaaaggactgtttagcggtgcaccagctgttattacatttcgcattcccacaaaggctgctctgcaggaggcatattcaacccccatactgcctttagatgttcttgctgacaggcctcctgagaagaaatttgagtgggttaagaggctgctggcaaagtatgggtctctgatctctgtgttatccattgtggttctgttcgtgtacctggttgccactcctggtaaatctggtggtgcaaaaggaagcaagaagaagcgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

411

Amino Acids

44.64

Weight (kDa)

5.63

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAP_beta PF05753 311 - 405 3e-19 Translocon-associated protein beta (TRAPB)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 269, 280, 987
AfaI GTAC 2 cut(s) 24, 1178
AfiI CCNNNNNNNGG 2 cut(s) 91, 206
AgeI ACCGGT 1 cut(s) 206
AjnI CCWGG 2 cut(s) 1179, 1192
AluBI AGCT 3 cut(s) 140, 171, 998
AluI AGCT 3 cut(s) 140, 171, 998
Alw21I GWGCWC 2 cut(s) 173, 994
Alw26I GTCTC 1 cut(s) 1143
Alw44I GTGCAC 1 cut(s) 990
AlwNI CAGNNNCTG 1 cut(s) 26
AoxI GGCC 3 cut(s) 266, 963, 1085
ApaLI GTGCAC 1 cut(s) 990
ApeKI GCWGC 6 cut(s) 4, 31, 187, 303, 1028, 1120
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
AsiGI ACCGGT 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 994
BanII GRGCYC 2 cut(s) 42, 173
Bbv12I GWGCWC 2 cut(s) 173, 994
BbvI GCAGC 6 cut(s) 16, 18, 199, 315, 1015, 1107
BciT130I CCWGG 2 cut(s) 1181, 1194
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 1143
BfmI CTRYAG 1 cut(s) 1034
BglI GCCNNNNNGGC 1 cut(s) 274
BisI GCNGC 7 cut(s) 5, 32, 188, 269, 304, 1029, 1121
BlsI GCNGC 7 cut(s) 6, 33, 189, 270, 305, 1030, 1122
Bme1390I CCNGG 3 cut(s) 110, 1181, 1194
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 278
BmrFI CCNGG 3 cut(s) 110, 1181, 1194
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 1143
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 206
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 2 cut(s) 1181, 1194
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 76
BseLI CCNNNNNNNGG 2 cut(s) 91, 206
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 328, 1083
BseNI ACTGG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 994
BseXI GCAGC 6 cut(s) 16, 18, 199, 315, 1015, 1107
BshFI GGCC 3 cut(s) 268, 965, 1087
BshTI ACCGGT 1 cut(s) 206
BsiHKAI GWGCWC 2 cut(s) 173, 994
BsiSI CCGG 2 cut(s) 110, 207
BslI CCNNNNNNNGG 2 cut(s) 91, 206
BsmAI GTCTC 1 cut(s) 1143
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 3 cut(s) 268, 965, 1087
Bso31I GGTCTC 1 cut(s) 1143
Bsp1286I GDGCHC 3 cut(s) 42, 173, 994
BspACI CCGC 3 cut(s) 269, 280, 987
BspANI GGCC 3 cut(s) 268, 965, 1087
BspCNI CTCAG 2 cut(s) 327, 1084
BspLI GGNNCC 1 cut(s) 278
BspMAI CTGCAG 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 1143
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 1181, 1194
Bst4CI ACNGT 2 cut(s) 215, 981
BstC8I GCNNGC 2 cut(s) 169, 1125
BstDEI CTNAG 2 cut(s) 314, 1092
BstF5I GGATG 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 1143
BstMWI GCNNNNNNNGC 2 cut(s) 37, 274
BstNI CCWGG 2 cut(s) 1181, 1194
BstSCI CCNGG 3 cut(s) 108, 1179, 1192
BstSFI CTRYAG 1 cut(s) 1034
BstSLI GKGCMC 1 cut(s) 994
BstV1I GCAGC 6 cut(s) 16, 18, 199, 315, 1015, 1107
BsuRI GGCC 3 cut(s) 268, 965, 1087
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 169, 1125
CaiI CAGNNNCTG 1 cut(s) 26
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 204
CsiI ACCWGGT 1 cut(s) 1179
Csp6I GTAC 2 cut(s) 23, 1177
CspAI ACCGGT 1 cut(s) 206
CviQI GTAC 2 cut(s) 23, 1177
DdeI CTNAG 2 cut(s) 314, 1092
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 200
Eco147I AGGCCT 1 cut(s) 1087
Eco24I GRGCYC 2 cut(s) 42, 173
Eco31I GGTCTC 1 cut(s) 1143
Eco47I GGWCC 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 1179, 1192
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 2 cut(s) 42, 173
ErhI CCWWGG 1 cut(s) 200
Fnu4HI GCNGC 7 cut(s) 5, 32, 188, 269, 304, 1029, 1121
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 2 cut(s) 42, 173
Fsp4HI GCNGC 7 cut(s) 5, 32, 188, 269, 304, 1029, 1121
GluI GCNGC 7 cut(s) 5, 32, 188, 269, 304, 1029, 1121
HaeIII GGCC 3 cut(s) 268, 965, 1087
HapII CCGG 2 cut(s) 110, 207
HpaII CCGG 2 cut(s) 110, 207
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 3 cut(s) 11, 992, 1177
Hpy188I TCNGA 1 cut(s) 1143
Hpy188III TCNNGA 1 cut(s) 1091
Hpy8I GTNNAC 3 cut(s) 11, 992, 1177
HpyAV CCTTC 1 cut(s) 923
HpyCH4III ACNGT 2 cut(s) 215, 981
HpyCH4V TGCA 5 cut(s) 4, 34, 992, 1036, 1211
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 274
HpyF3I CTNAG 2 cut(s) 314, 1092
LmnI GCTCC 2 cut(s) 176, 282
Lsp1109I GCAGC 6 cut(s) 16, 18, 199, 315, 1015, 1107
MabI ACCWGGT 1 cut(s) 1179
MboII GAAGA 1 cut(s) 1108
MfeI CAATTG 1 cut(s) 251
MhlI GDGCHC 3 cut(s) 42, 173, 994
MseI TTAA 2 cut(s) 1113, 1234
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 2 cut(s) 110, 207
MspR9I CCNGG 3 cut(s) 110, 1181, 1194
MunI CAATTG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 1014
MvaI CCWGG 2 cut(s) 1181, 1194
MwoI GCNNNNNNNGC 2 cut(s) 37, 274
NciI CCSGG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 278
PceI AGGCCT 1 cut(s) 1087
PctI GAATGC 1 cut(s) 1014
PinAI ACCGGT 1 cut(s) 206
PkrI GCNGC 7 cut(s) 6, 33, 189, 270, 305, 1030, 1122
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 1179, 1192
PspGI CCWGG 2 cut(s) 1179, 1192
PspN4I GGNNCC 1 cut(s) 278
PspPI GGNCC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 1038
PstNI CAGNNNCTG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 2 cut(s) 24, 1178
RsaNI GTAC 2 cut(s) 23, 1177
SacI GAGCTC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 1113, 1234
SatI GCNGC 7 cut(s) 5, 32, 188, 269, 304, 1029, 1121
Sau96I GGNCC 1 cut(s) 204
ScrFI CCNGG 3 cut(s) 110, 1181, 1194
SduI GDGCHC 3 cut(s) 42, 173, 994
SetI ASST 7 cut(s) 28, 76, 142, 173, 934, 1000, 1182
SexAI ACCWGGT 1 cut(s) 1179
SfcI CTRYAG 1 cut(s) 1034
SinI GGWCC 1 cut(s) 204
SseBI AGGCCT 1 cut(s) 1087
SsiI CCGC 3 cut(s) 269, 280, 987
SstI GAGCTC 1 cut(s) 173
StuI AGGCCT 1 cut(s) 1087
StyD4I CCNGG 3 cut(s) 108, 1179, 1192
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 215, 981
TauI GCSGC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 1113, 1234
Tru9I TTAA 2 cut(s) 1113, 1234
TscAI CASTG 1 cut(s) 322
TseI GCWGC 6 cut(s) 4, 31, 187, 303, 1028, 1120
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 990
VpaK11BI GGWCC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.