Rmu_sc0000411.1_g000002
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000411.1
N/A
Physical Location & Seq
Reverse (-)
11727 .. 14316
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000411.1_g000002.1.cds

Sequence Viewer

Length: 930 bp
atggaggcgatcgaagagttgttgcaactgtcagactccatgcgccaaggccaggccgtcctcgccgacgaagacgttgacgaaaactctcccgcctcctctcgccgctcctcaactttcctcaacgtcgtagctctcggcaatgttggtgccggtaaatcagctgttttgaacagcttaattggacatcctgtgttgccgactggtgagaatggtgctactcgagctccaatcagcattgatttacagagggatggttcattgagcagcaaatcgataatattgcagattgacaataagtcccagcaagtttctgcaagtgctttacggcattctttgcaagatagactgagtaagagttcttcaggcagaacccgagatgaaatttacttgaaactacggacaagtacagcccctcccctcaaattgattgatttacccgggcttgatcaacggactgtggatgagtctatgctaagtgaatatgcagagcacaatgatgcaattttgctggttataatacctgcatcacaagcacctgaagttgcttcctctaaagccctcagagctgtcaaggaatatgatggagatggtacaagaactgttggagtaatcagtaagatagaccaagccgcgtcagatccgaaagcacttgctgcagtccaggctctgcttttaaatcaggggccatcaagagcatctgatattccctgggttgctctaataggtcaatcagtttcgatagcttccgcacagtctggctctgagaattctttggaaactgcttggagggctgaaagtgaaagtcttaaatccattctgaccggtgctcctcaaagtaagctaggcagaattgcgctagtggatgctttggcccagcaaattcgcagtcgcatgaaaatccggcttccgaacctcctttctgggtaa
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

309

Amino Acids

32.75

Weight (kDa)

5.74

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 532
AccB1I GGYRCC 1 cut(s) 149
AccBSI CCGCTC 1 cut(s) 108
AccII CGCG 1 cut(s) 635
AciI CCGC 4 cut(s) 93, 106, 633, 750
AclWI GGATC 1 cut(s) 635
AcsI RAATTY 3 cut(s) 384, 769, 882
AcuI CTGAAG 2 cut(s) 348, 561
AfaI GTAC 2 cut(s) 409, 595
AfiI CCNNNNNNNGG 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 824
AgsI TTSAA 2 cut(s) 172, 394
AhdI GACNNNNNGTC 1 cut(s) 298
AjnI CCWGG 3 cut(s) 51, 663, 710
AluBI AGCT 7 cut(s) 134, 164, 177, 227, 569, 746, 844
AluI AGCT 7 cut(s) 134, 164, 177, 227, 569, 746, 844
Alw21I GWGCWC 3 cut(s) 229, 495, 832
AlwI GGATC 1 cut(s) 635
AlwNI CAGNNNCTG 1 cut(s) 670
Ama87I CYCGRG 3 cut(s) 222, 375, 440
AoxI GGCC 4 cut(s) 49, 54, 686, 873
ApeKI GCWGC 2 cut(s) 267, 656
ApoI RAATTY 3 cut(s) 384, 769, 882
ArsI GACNNNNNNTTYG 2 cut(s) 874, 906
AsiGI ACCGGT 1 cut(s) 824
AspLEI GCGC 2 cut(s) 45, 859
AspS9I GGNCC 2 cut(s) 686, 874
AsuC2I CCSGG 2 cut(s) 441, 442
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 3 cut(s) 222, 375, 440
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 3 cut(s) 229, 495, 832
BbvI GCAGC 2 cut(s) 279, 643
BccI CCATC 4 cut(s) 248, 578, 584, 697
BceAI ACGGC 2 cut(s) 41, 344
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 3 cut(s) 53, 665, 712
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 2 cut(s) 441, 442
BfaI CTAG 2 cut(s) 845, 860
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 532
BisI GCNGC 4 cut(s) 106, 268, 633, 657
BlsI GCNGC 4 cut(s) 107, 269, 634, 658
Bme1390I CCNGG 5 cut(s) 53, 441, 442, 665, 712
BmeRI GACNNNNNGTC 1 cut(s) 298
BmeT110I CYCGRG 3 cut(s) 222, 375, 440
BmgT120I GGNCC 2 cut(s) 686, 874
BmiI GGNNCC 2 cut(s) 151, 687
BmrFI CCNGG 5 cut(s) 53, 441, 442, 665, 712
BmsI GCATC 4 cut(s) 490, 536, 707, 856
BpiI GAAGAC 1 cut(s) 78
BpuMI CCSGG 2 cut(s) 441, 442
Bsa29I ATCGAT 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 46, 440, 710, 711
BsaWI WCCGGW 1 cut(s) 824
BsaXI ACNNNNNCTCC 6 cut(s) 211, 241, 400, 430, 814, 844
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse118I RCCGGY 2 cut(s) 152, 824
Bse1I ACTGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 3 cut(s) 53, 665, 712
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 4 cut(s) 46, 440, 710, 711
BseGI GGATG 4 cut(s) 187, 259, 469, 871
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 3 cut(s) 341, 577, 756
BseNI ACTGG 1 cut(s) 208
BseRI GAGGAG 3 cut(s) 88, 100, 822
BseXI GCAGC 2 cut(s) 279, 643
BseYI CCCAGC 2 cut(s) 303, 876
Bsh1236I CGCG 1 cut(s) 635
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 4 cut(s) 51, 56, 688, 875
BshNI GGYRCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 824
BshVI ATCGAT 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 12
BsiHKAI GWGCWC 3 cut(s) 229, 495, 832
BsiHKCI CYCGRG 3 cut(s) 222, 375, 440
BsiSI CCGG 4 cut(s) 153, 441, 825, 904
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 331
BsnI GGCC 4 cut(s) 51, 56, 688, 875
BsoBI CYCGRG 3 cut(s) 222, 375, 440
Bsp1286I GDGCHC 3 cut(s) 229, 495, 832
Bsp143I GATC 3 cut(s) 9, 448, 640
BspACI CCGC 4 cut(s) 93, 106, 633, 750
BspANI GGCC 4 cut(s) 51, 56, 688, 875
BspCNI CTCAG 3 cut(s) 342, 576, 757
BspDI ATCGAT 1 cut(s) 275
BspFNI CGCG 1 cut(s) 635
BspLI GGNNCC 2 cut(s) 151, 687
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 532
BspPI GGATC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 148
BsrFI RCCGGY 2 cut(s) 152, 824
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 2 cut(s) 152, 824
BssECI CCNNGG 4 cut(s) 46, 440, 710, 711
BssMI GATC 3 cut(s) 9, 448, 640
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 3 cut(s) 53, 665, 712
Bst4CI ACNGT 4 cut(s) 30, 460, 604, 756
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 2 cut(s) 337, 656
BstDEI CTNAG 4 cut(s) 350, 476, 563, 765
BstF5I GGATG 4 cut(s) 187, 259, 469, 871
BstFNI CGCG 1 cut(s) 635
BstHHI GCGC 2 cut(s) 45, 859
BstKTI GATC 3 cut(s) 12, 451, 643
BstMBI GATC 3 cut(s) 9, 448, 640
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 8 cut(s) 62, 224, 337, 533, 566, 656, 665, 791
BstNI CCWGG 3 cut(s) 53, 665, 712
BstSCI CCNGG 5 cut(s) 51, 439, 440, 663, 710
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 1 cut(s) 635
BstV1I GCAGC 2 cut(s) 279, 643
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 275
BsuRI GGCC 4 cut(s) 51, 56, 688, 875
BsuTUI ATCGAT 1 cut(s) 275
BtsCI GGATG 4 cut(s) 187, 259, 469, 871
BveI ACCTGC 1 cut(s) 532
CaiI CAGNNNCTG 1 cut(s) 670
CfoI GCGC 2 cut(s) 45, 859
Cfr10I RCCGGY 2 cut(s) 152, 824
Cfr13I GGNCC 2 cut(s) 686, 874
Cfr9I CCCGGG 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 275
CseI GACGC 1 cut(s) 624
Csp6I GTAC 2 cut(s) 408, 594
CspAI ACCGGT 1 cut(s) 824
CviAII CATG 2 cut(s) 40, 895
CviQI GTAC 2 cut(s) 408, 594
DdeI CTNAG 4 cut(s) 350, 476, 563, 765
DpnI GATC 3 cut(s) 11, 450, 642
DpnII GATC 3 cut(s) 9, 448, 640
DraI TTTAAA 1 cut(s) 678
DriI GACNNNNNGTC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 298
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 348, 561
Eco88I CYCGRG 3 cut(s) 222, 375, 440
EcoICRI GAGCTC 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 769
EcoRII CCWGG 3 cut(s) 51, 663, 710
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 43, 898
FaiI YATR 6 cut(s) 41, 473, 486, 518, 582, 896
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 39, 894
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 106, 268, 633, 657
FokI GGATG 4 cut(s) 174, 266, 476, 878
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 106, 268, 633, 657
FspBI CTAG 2 cut(s) 845, 860
GlaI GCGC 2 cut(s) 44, 858
GluI GCNGC 4 cut(s) 106, 268, 633, 657
GsaI CCCAGC 2 cut(s) 307, 880
HaeIII GGCC 4 cut(s) 51, 56, 688, 875
HapII CCGG 4 cut(s) 153, 441, 825, 904
HgaI GACGC 1 cut(s) 624
HhaI GCGC 2 cut(s) 45, 859
Hin1II CATG 2 cut(s) 43, 898
Hin6I GCGC 2 cut(s) 43, 857
HinP1I GCGC 2 cut(s) 43, 857
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 35, 467
HpaII CCGG 4 cut(s) 153, 441, 825, 904
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 8 cut(s) 34, 566, 640, 645, 703, 766, 822, 912
Hpy188III TCNNGA 1 cut(s) 693
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 2 cut(s) 71, 131
HpyCH4III ACNGT 4 cut(s) 30, 460, 604, 756
HpyCH4IV ACGT 2 cut(s) 75, 126
HpyCH4V TGCA 8 cut(s) 25, 286, 317, 340, 488, 503, 527, 659
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 224, 337, 533, 566, 656, 665, 791
HpyF3I CTNAG 4 cut(s) 350, 476, 563, 765
HpySE526I ACGT 2 cut(s) 75, 126
Hsp92II CATG 2 cut(s) 43, 898
HspAI GCGC 2 cut(s) 43, 857
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 3 cut(s) 9, 448, 640
LmnI GCTCC 3 cut(s) 113, 232, 835
Lsp1109I GCAGC 2 cut(s) 279, 643
LweI GCATC 4 cut(s) 490, 536, 707, 856
MaeI CTAG 2 cut(s) 845, 860
MaeII ACGT 2 cut(s) 75, 126
MalI GATC 3 cut(s) 11, 450, 642
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 9, 448, 640
MboII GAAGA 3 cut(s) 26, 83, 354
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 3 cut(s) 229, 495, 832
MluCI AATT 7 cut(s) 180, 384, 425, 504, 769, 852, 882
MlyI GAGTC 2 cut(s) 29, 476
MmeI TCCRAC 1 cut(s) 586
MseI TTAA 3 cut(s) 179, 677, 810
MslI CAYNNNNRTG 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 4 cut(s) 153, 441, 825, 904
MspR9I CCNGG 5 cut(s) 53, 441, 442, 665, 712
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 3 cut(s) 53, 665, 712
MvnI CGCG 1 cut(s) 635
MwoI GCNNNNNNNGC 8 cut(s) 62, 224, 337, 533, 566, 656, 665, 791
NciI CCSGG 2 cut(s) 441, 442
NdeII GATC 3 cut(s) 9, 448, 640
NlaIII CATG 2 cut(s) 43, 898
NlaIV GGNNCC 2 cut(s) 151, 687
NmeAIII GCCGAG 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 222
PasI CCCWGGG 1 cut(s) 711
PctI GAATGC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 824
PkrI GCNGC 4 cut(s) 107, 269, 634, 658
Ple19I CGATCG 1 cut(s) 12
PleI GAGTC 2 cut(s) 29, 475
PpsI GAGTC 2 cut(s) 29, 475
PsiI TTATAA 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 3 cut(s) 51, 663, 710
PspFI CCCAGC 2 cut(s) 303, 876
PspGI CCWGG 3 cut(s) 51, 663, 710
PspN4I GGNNCC 2 cut(s) 151, 687
PspPI GGNCC 2 cut(s) 686, 874
PspXI VCTCGAGB 1 cut(s) 222
PstI CTGCAG 1 cut(s) 661
PstNI CAGNNNCTG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 640
PvuI CGATCG 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 409, 595
RsaNI GTAC 2 cut(s) 408, 594
RseI CAYNNNNRTG 1 cut(s) 498
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 179, 677, 810
SatI GCNGC 4 cut(s) 106, 268, 633, 657
Sau3AI GATC 3 cut(s) 9, 448, 640
Sau96I GGNCC 2 cut(s) 686, 874
SchI GAGTC 2 cut(s) 29, 476
ScrFI CCNGG 5 cut(s) 53, 441, 442, 665, 712
SduI GDGCHC 3 cut(s) 229, 495, 832
SfaNI GCATC 4 cut(s) 490, 536, 707, 856
SfcI CTRYAG 1 cut(s) 657
Sfr274I CTCGAG 1 cut(s) 222
SlaI CTCGAG 1 cut(s) 222
SmaI CCCGGG 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 7 cut(s) 180, 384, 425, 504, 769, 852, 882
SsiI CCGC 4 cut(s) 93, 106, 633, 750
SspI AATATT 1 cut(s) 282
SspMI CTAG 2 cut(s) 845, 860
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 5 cut(s) 51, 439, 440, 663, 710
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 4 cut(s) 30, 460, 604, 756
TaiI ACGT 2 cut(s) 78, 129
TaqI TCGA 4 cut(s) 12, 223, 275, 740
TasI AATT 7 cut(s) 180, 384, 425, 504, 769, 852, 882
TatI WGTACW 1 cut(s) 407
TauI GCSGC 2 cut(s) 108, 635
Tru1I TTAA 3 cut(s) 179, 677, 810
Tru9I TTAA 3 cut(s) 179, 677, 810
TseI GCWGC 2 cut(s) 267, 656
TspDTI ATGAA 3 cut(s) 249, 396, 911
TspGWI ACGGA 2 cut(s) 415, 469
TspMI CCCGGG 1 cut(s) 440
XapI RAATTY 3 cut(s) 384, 769, 882
XhoI CTCGAG 1 cut(s) 222
XmaI CCCGGG 1 cut(s) 440
XspI CTAG 2 cut(s) 845, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.