Rmu_sc0000415.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000415.1
N/A
Physical Location & Seq
Reverse (-)
36885 .. 39148
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
atgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccacctcacttcaaagggaatattacccataatccaggcacctaacccggatcgtgtgttcgtgcgaaaacctacaaagaaagctcaagcagttatcttgatgctacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatcggtagcgctagaagagcgctttggcaatgtccaagatttcctcctccctgacttgaaggttcaatggaacaatctgcgctttgttaatttcaagtctattgctgaatataattcagaagctcttcgcctacagtccatgttgaggttttgtggacaacctgtcacagagcaagagctaattgagaaaactctctccacctttcccgtttcagccattatgagggtgaatcagaagcatccaacactttatttgatcaatcaccacaacctatgcaccaccaccatcacctcaagctttattgaccatggtaatgttcatctggtaaatgatacatgtatccttgaggccaaggtcatacttgataaaggtaaagctaagattttagaagatagaagaacggttggtgttgcacccgtgcaaccctcagaagagaaacttaaggagcagggacctgatatggattctgtaaaagctccagactttttgactacttgcaaggaaatgaattatgtacagatgcctgcctgccaggatgcaccaagtaattttgaaagaaattgcaccgatcctactagccctataggttcaggatgtacatcaagaagacgggaattgagaccttcagatgtggatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

286

Amino Acids

32.41

Weight (kDa)

6.46

Isoelectric Point (pI)

51.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AclWI GGATC 2 cut(s) 111, 782
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 2 cut(s) 735, 817
AfeI AGCGCT 2 cut(s) 228, 239
AfiI CCNNNNNNNGG 3 cut(s) 34, 363, 441
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 554
AgsI TTSAA 5 cut(s) 66, 277, 284, 313, 773
AhdI GACNNNNNGTC 1 cut(s) 380
AjnI CCWGG 2 cut(s) 87, 750
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 7 cut(s) 137, 217, 341, 397, 516, 596, 695
AluI AGCT 7 cut(s) 137, 217, 341, 397, 516, 596, 695
Alw26I GTCTC 1 cut(s) 832
AlwI GGATC 2 cut(s) 111, 782
Aor51HI AGCGCT 2 cut(s) 228, 239
AoxI GGCC 1 cut(s) 567
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 3 cut(s) 229, 240, 300
AspS9I GGNCC 1 cut(s) 671
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 457, 473, 499
AvaII GGWCC 1 cut(s) 671
BanI GGYRCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 832
BccI CCATC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 89, 752
BciVI GTATCC 1 cut(s) 569
BclI TGATCA 1 cut(s) 474
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 832
BfaI CTAG 2 cut(s) 230, 795
BfmI CTRYAG 2 cut(s) 350, 801
BfoI RGCGCY 2 cut(s) 230, 241
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 569
Bme1390I CCNGG 3 cut(s) 89, 101, 752
Bme18I GGWCC 1 cut(s) 671
BmeRI GACNNNNNGTC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 2 cut(s) 93, 672
BmrFI CCNGG 3 cut(s) 89, 101, 752
BmsI GCATC 5 cut(s) 144, 196, 466, 729, 745
BpiI GAAGAC 1 cut(s) 832
BpmI CTGGAG 1 cut(s) 681
BpuEI CTTGAG 3 cut(s) 123, 496, 584
BpuMI CCSGG 1 cut(s) 101
BsaBI GATNNNNATC 2 cut(s) 817, 852
BsaI GGTCTC 1 cut(s) 832
BsaJI CCNNGG 2 cut(s) 526, 570
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 363, 441
Bse3DI GCAATG 1 cut(s) 253
Bse8I GATNNNNATC 2 cut(s) 817, 852
BseBI CCWGG 2 cut(s) 89, 752
BseDI CCNNGG 2 cut(s) 526, 570
BseGI GGATG 4 cut(s) 211, 457, 760, 818
BseJI GATNNNNATC 2 cut(s) 817, 852
BseLI CCNNNNNNNGG 3 cut(s) 34, 363, 441
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 193, 660
BseRI GAGGAG 1 cut(s) 254
BshFI GGCC 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 1 cut(s) 684
BslI CCNNNNNNNGG 3 cut(s) 34, 363, 441
BsmAI GTCTC 1 cut(s) 832
BsmFI GGGAC 1 cut(s) 684
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 832
Bsp1407I TGTACA 2 cut(s) 733, 815
Bsp143I GATC 5 cut(s) 103, 198, 474, 787, 853
Bsp19I CCATGG 1 cut(s) 526
BspANI GGCC 1 cut(s) 569
BspCNI CTCAG 2 cut(s) 192, 659
BspLI GGNNCC 2 cut(s) 93, 672
BspPI GGATC 2 cut(s) 111, 782
BspQI GCTCTTC 2 cut(s) 228, 348
BspT107I GGYRCC 1 cut(s) 91
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 253
BsrGI TGTACA 2 cut(s) 733, 815
BssECI CCNNGG 2 cut(s) 526, 570
BssMI GATC 5 cut(s) 103, 198, 474, 787, 853
BssT1I CCWWGG 2 cut(s) 526, 570
Bst2UI CCWGG 2 cut(s) 89, 752
Bst4CI ACNGT 3 cut(s) 32, 354, 622
Bst6I CTCTTC 3 cut(s) 228, 348, 645
BstAFI CTTAAG 1 cut(s) 659
BstAUI TGTACA 2 cut(s) 733, 815
BstC8I GCNNGC 2 cut(s) 744, 748
BstDEI CTNAG 3 cut(s) 179, 597, 646
BstDSI CCRYGG 1 cut(s) 526
BstEII GGTNACC 1 cut(s) 37
BstF5I GGATG 4 cut(s) 211, 457, 760, 818
BstH2I RGCGCY 2 cut(s) 230, 241
BstHHI GCGC 3 cut(s) 229, 240, 300
BstKTI GATC 5 cut(s) 106, 201, 477, 790, 856
BstMAI GTCTC 1 cut(s) 832
BstMBI GATC 5 cut(s) 103, 198, 474, 787, 853
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 89, 752
BstNSI RCATGY 1 cut(s) 558
BstPI GGTNACC 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 87, 99, 750
BstSFI CTRYAG 2 cut(s) 350, 801
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BsuI GTATCC 1 cut(s) 569
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 4 cut(s) 211, 457, 760, 818
Cac8I GCNNGC 2 cut(s) 744, 748
CfoI GCGC 3 cut(s) 229, 240, 300
Cfr13I GGNCC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 734, 816
CviAII CATG 3 cut(s) 358, 527, 555
CviQI GTAC 2 cut(s) 734, 816
DdeI CTNAG 3 cut(s) 179, 597, 646
DpnI GATC 5 cut(s) 105, 200, 476, 789, 855
DpnII GATC 5 cut(s) 103, 198, 474, 787, 853
DriI GACNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 3 cut(s) 228, 348, 645
Eam1105I GACNNNNNGTC 1 cut(s) 380
EarI CTCTTC 3 cut(s) 228, 348, 645
Eco130I CCWWGG 2 cut(s) 526, 570
Eco31I GGTCTC 1 cut(s) 832
Eco47I GGWCC 1 cut(s) 671
Eco47III AGCGCT 2 cut(s) 228, 239
Eco57I CTGAAG 1 cut(s) 828
Eco91I GGTNACC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 671
EcoO65I GGTNACC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 87, 750
EcoT14I CCWWGG 2 cut(s) 526, 570
ErhI CCWWGG 2 cut(s) 526, 570
FaeI CATG 3 cut(s) 361, 530, 558
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FaqI GGGAC 1 cut(s) 684
FatI CATG 3 cut(s) 357, 526, 554
FauNDI CATATG 1 cut(s) 165
FbaI TGATCA 1 cut(s) 474
FokI GGATG 4 cut(s) 218, 444, 767, 825
FspBI CTAG 2 cut(s) 230, 795
GlaI GCGC 3 cut(s) 228, 239, 299
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 2 cut(s) 230, 241
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 101
HhaI GCGC 3 cut(s) 229, 240, 300
Hin1II CATG 3 cut(s) 361, 530, 558
Hin6I GCGC 3 cut(s) 227, 238, 298
HinP1I GCGC 3 cut(s) 227, 238, 298
HindIII AAGCTT 1 cut(s) 514
HinfI GANTC 3 cut(s) 8, 448, 683
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 457, 473, 499
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 6 cut(s) 22, 182, 337, 453, 649, 847
Hpy188III TCNNGA 4 cut(s) 151, 698, 810, 822
Hpy8I GTNNAC 1 cut(s) 374
HpyAV CCTTC 2 cut(s) 271, 852
HpyCH4III ACNGT 3 cut(s) 32, 354, 622
HpyCH4V TGCA 7 cut(s) 209, 495, 632, 640, 717, 758, 783
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 3 cut(s) 179, 597, 646
Hsp92II CATG 3 cut(s) 361, 530, 558
HspAI GCGC 3 cut(s) 227, 238, 298
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 5 cut(s) 103, 198, 474, 787, 853
LguI GCTCTTC 2 cut(s) 228, 348
LmnI GCTCC 2 cut(s) 664, 700
LweI GCATC 5 cut(s) 144, 196, 466, 729, 745
MaeI CTAG 2 cut(s) 230, 795
MaeIII GTNAC 2 cut(s) 37, 382
MalI GATC 5 cut(s) 105, 200, 476, 789, 855
MboI GATC 5 cut(s) 103, 198, 474, 787, 853
MboII GAAGA 6 cut(s) 245, 335, 620, 627, 662, 837
MflI RGATCY 1 cut(s) 853
MluCI AATT 7 cut(s) 307, 331, 399, 727, 766, 778, 833
MlyI GAGTC 1 cut(s) 2
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 8 cut(s) 68, 272, 275, 357, 435, 520, 559, 655
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 2 cut(s) 306, 660
MslI CAYNNNNRTG 1 cut(s) 531
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 89, 101, 752
MvaI CCWGG 2 cut(s) 89, 752
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 526
NdeI CATATG 1 cut(s) 165
NdeII GATC 5 cut(s) 103, 198, 474, 787, 853
NlaIII CATG 3 cut(s) 361, 530, 558
NlaIV GGNNCC 2 cut(s) 93, 672
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 558
PciI ACATGT 1 cut(s) 554
PciSI GCTCTTC 2 cut(s) 228, 348
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 448, 683
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
PpuMI RGGWCCY 1 cut(s) 671
PscI ACATGT 1 cut(s) 554
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 2 cut(s) 87, 750
PspEI GGTNACC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 87, 750
PspN4I GGNNCC 2 cut(s) 93, 672
PspPI GGNCC 1 cut(s) 671
PspPPI RGGWCCY 1 cut(s) 671
PsuI RGATCY 1 cut(s) 853
RsaI GTAC 2 cut(s) 735, 817
RsaNI GTAC 2 cut(s) 734, 816
RseI CAYNNNNRTG 1 cut(s) 531
SapI GCTCTTC 2 cut(s) 228, 348
SaqAI TTAA 2 cut(s) 306, 660
Sau3AI GATC 5 cut(s) 103, 198, 474, 787, 853
Sau96I GGNCC 1 cut(s) 671
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 3 cut(s) 89, 101, 752
SfaNI GCATC 5 cut(s) 144, 196, 466, 729, 745
SfcI CTRYAG 2 cut(s) 350, 801
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 4 cut(s) 138, 511, 563, 659
SmoI CTYRAG 4 cut(s) 138, 511, 563, 659
Sse9I AATT 7 cut(s) 307, 331, 399, 727, 766, 778, 833
SspI AATATT 1 cut(s) 75
SspMI CTAG 2 cut(s) 230, 795
StyD4I CCNGG 3 cut(s) 87, 99, 750
StyI CCWWGG 2 cut(s) 526, 570
TaaI ACNGT 3 cut(s) 32, 354, 622
TaqI TCGA 1 cut(s) 197
TasI AATT 7 cut(s) 307, 331, 399, 727, 766, 778, 833
TatI WGTACW 2 cut(s) 733, 815
TfiI GAWTC 2 cut(s) 448, 683
Tru1I TTAA 2 cut(s) 306, 660
Tru9I TTAA 2 cut(s) 306, 660
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 2 cut(s) 527, 740
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 671
XceI RCATGY 1 cut(s) 558
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 230, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.