Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000424.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

445 .. 6184

Gene Structure 5740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgatgctgggagaaatctctcggaggctgaaattagcaggttatgttgccaataccaaccctgtgctgttcgatatagaagaagaagagaaagagaatgcattgtttaaacacagcgagaagtttgccattgcttttggtttgatcagtttgagacaaggagtgcccattaggattgtgaagaacctcagggtctgttgggattgtcatgatgtaacaaaaatgatatccaagattttcaatagagagattatagtaagagatagaaatagatgccgatcgacaaggccttcttctccgagaccggcaccggcaagcacatcccaggcacaatcttcgtcgaccttgagcccaccgtcccagtcgctgctgctcgcgctagtatcggccaataaaccctcgttctggaagctcctggagaagctggtcccaatgtgggaatttgggtccgataggaactcgtcgagcacatccgaaatcacaatcggagacgacgacgtagatggtgtcgtaaatgggagcaaggagtcgtctttgtctcaacctctgagcgccgccgtcacccaaaccactgatccaacgatccaaggcctattgccacaactcagccccaacgccgatccgactccgatcccagcccgattcgactccgctccccttacacaaccacgccccaaccactcctgcataggactcacacttcggtgggtgcccacaactttttttttttcgacgccagaatcctgtcaccagtccggtagccggattccagtgaccggtcgcgggagtccgatcaccggtcgtcggagtccgccacaggagtcccaagcctgccactggtcaccggagttccgcaaggtctccgatgacttctctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

293

Amino Acids

32.34

Weight (kDa)

8.78

Isoelectric Point (pI)

72.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	14 - 92	7.6e-30	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	29
AccB1I	GGYRCC	2 cut(s)	307, 709
AccBSI	CCGCTC	1 cut(s)	653
AccI	GTMKAC	1 cut(s)	341
AccII	CGCG	2 cut(s)	377, 783
AciI	CCGC	5 cut(s)	555, 651, 783, 812, 853
AclWI	GGATC	4 cut(s)	569, 577, 614, 625
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	734
AfiI	CCNNNNNNNGG	8 cut(s)	405, 436, 762, 776, 783, 797, 804, 837
AgeI	ACCGGT	2 cut(s)	776, 797
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	324, 414
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	2 cut(s)	412, 424
AluI	AGCT	2 cut(s)	412, 424
Alw21I	GWGCWC	1 cut(s)	470
Alw26I	GTCTC	5 cut(s)	148, 295, 483, 543, 865
AlwI	GGATC	4 cut(s)	569, 577, 614, 625
AlwNI	CAGNNNCTG	2 cut(s)	195, 367
AoxI	GGCC	3 cut(s)	287, 387, 589
ApeKI	GCWGC	2 cut(s)	367, 370
ApoI	RAATTY	1 cut(s)	440
ArsI	GACNNNNNNTTYG	2 cut(s)	684, 716
AsiGI	ACCGGT	2 cut(s)	776, 797
AspLEI	GCGC	2 cut(s)	379, 554
AspS9I	GGNCC	2 cut(s)	427, 447
AsuHPI	GGTGA	4 cut(s)	553, 740, 787, 834
AvaII	GGWCC	2 cut(s)	427, 447
AxyI	CCTNAGG	1 cut(s)	188
BaeGI	GKGCMC	2 cut(s)	168, 714
BanI	GGYRCC	2 cut(s)	307, 709
BanII	GRGCYC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	354, 357
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	1 cut(s)	542
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 318, 352
BciT130I	CCWGG	2 cut(s)	326, 416
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	5 cut(s)	148, 295, 483, 543, 865
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	29
BisI	GCNGC	3 cut(s)	368, 371, 555
BlsI	GCNGC	3 cut(s)	369, 372, 556
Bme1390I	CCNGG	2 cut(s)	326, 416
Bme18I	GGWCC	2 cut(s)	427, 447
BmgT120I	GGNCC	2 cut(s)	427, 447
BmiI	GGNNCC	4 cut(s)	309, 429, 448, 711
BmrFI	CCNGG	2 cut(s)	326, 416
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	734
BsaI	GGTCTC	2 cut(s)	295, 865
BsaJI	CCNNGG	2 cut(s)	324, 586
BsaWI	WCCGGW	4 cut(s)	755, 776, 797, 844
Bsc4I	CCNNNNNNNGG	8 cut(s)	405, 436, 762, 776, 783, 797, 804, 837
Bse118I	RCCGGY	4 cut(s)	304, 310, 776, 797
Bse1I	ACTGG	4 cut(s)	361, 751, 770, 842
Bse21I	CCTNAGG	1 cut(s)	188
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	326, 416
BseDI	CCNNGG	2 cut(s)	324, 586
BseGI	GGATG	2 cut(s)	320, 470
BseJI	GATNNNNATC	1 cut(s)	277
BseLI	CCNNNNNNNGG	8 cut(s)	405, 436, 762, 776, 783, 797, 804, 837
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	202, 539, 619
BseNI	ACTGG	4 cut(s)	361, 751, 770, 842
BseSI	GKGCMC	2 cut(s)	168, 714
BseXI	GCAGC	2 cut(s)	354, 357
BseYI	CCCAGC	2 cut(s)	7, 634
Bsh1236I	CGCG	2 cut(s)	377, 783
Bsh1285I	CGRYCG	3 cut(s)	281, 781, 802
BshFI	GGCC	3 cut(s)	289, 389, 591
BshNI	GGYRCC	2 cut(s)	307, 709
BshTI	ACCGGT	2 cut(s)	776, 797
BsiEI	CGRYCG	3 cut(s)	281, 781, 802
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	7 cut(s)	305, 311, 756, 763, 777, 798, 845
BslFI	GGGAC	3 cut(s)	343, 413, 808
BslI	CCNNNNNNNGG	8 cut(s)	405, 436, 762, 776, 783, 797, 804, 837
BsmAI	GTCTC	5 cut(s)	148, 295, 483, 543, 865
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	3 cut(s)	343, 413, 808
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	289, 389, 591
Bso31I	GGTCTC	2 cut(s)	295, 865
Bsp1286I	GDGCHC	4 cut(s)	168, 353, 470, 714
Bsp143I	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
BspACI	CCGC	5 cut(s)	555, 651, 783, 812, 853
BspANI	GGCC	3 cut(s)	289, 389, 591
BspCNI	CTCAG	3 cut(s)	201, 540, 618
BspFNI	CGCG	2 cut(s)	377, 783
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	309, 429, 448, 711
BspMI	ACCTGC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	569, 577, 614, 625
BspT107I	GGYRCC	2 cut(s)	307, 709
BspTNI	GGTCTC	2 cut(s)	295, 865
BsrBI	CCGCTC	1 cut(s)	653
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	4 cut(s)	304, 310, 776, 797
BsrI	ACTGG	4 cut(s)	361, 751, 770, 842
BssAI	RCCGGY	4 cut(s)	304, 310, 776, 797
BssECI	CCNNGG	2 cut(s)	324, 586
BssMI	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
BssNI	GRCGYC	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	586
Bst2UI	CCWGG	2 cut(s)	326, 416
Bst4CI	ACNGT	1 cut(s)	357
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	734
BstC8I	GCNNGC	3 cut(s)	316, 375, 832
BstDEI	CTNAG	3 cut(s)	188, 548, 605
BstEII	GGTNACC	1 cut(s)	840
BstF5I	GGATG	2 cut(s)	320, 470
BstFNI	CGCG	2 cut(s)	377, 783
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	2 cut(s)	379, 554
BstKTI	GATC	7 cut(s)	147, 281, 577, 585, 622, 633, 795
BstMAI	GTCTC	5 cut(s)	148, 295, 483, 543, 865
BstMBI	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
BstMCI	CGRYCG	3 cut(s)	281, 781, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	2 cut(s)	326, 416
BstPI	GGTNACC	1 cut(s)	840
BstSCI	CCNGG	2 cut(s)	324, 414
BstSLI	GKGCMC	2 cut(s)	168, 714
BstUI	CGCG	2 cut(s)	377, 783
BstV1I	GCAGC	2 cut(s)	354, 357
Bsu36I	CCTNAGG	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	289, 389, 591
BtsCI	GGATG	2 cut(s)	320, 470
BtsIMutI	CAGTG	3 cut(s)	570, 777, 835
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	316, 375, 832
CaiI	CAGNNNCTG	2 cut(s)	195, 367
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	2 cut(s)	379, 554
Cfr10I	RCCGGY	4 cut(s)	304, 310, 776, 797
Cfr13I	GGNCC	2 cut(s)	427, 447
CseI	GACGC	1 cut(s)	742
CspAI	ACCGGT	2 cut(s)	776, 797
CviAII	CATG	1 cut(s)	209
DdeI	CTNAG	3 cut(s)	188, 548, 605
DpnI	GATC	7 cut(s)	146, 280, 576, 584, 621, 632, 794
DpnII	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
DraI	TTTAAA	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	586
Eco147I	AGGCCT	2 cut(s)	289, 591
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	295, 865
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	427, 447
Eco81I	CCTNAGG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	840
EcoO65I	GGTNACC	1 cut(s)	840
EcoRII	CCWGG	2 cut(s)	324, 414
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	586
EcoT22I	ATGCAT	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	1 cut(s)	212
FaiI	YATR	5 cut(s)	45, 77, 210, 254, 689
FalI	AAGNNNNNCTT	2 cut(s)	277, 309
FaqI	GGGAC	3 cut(s)	343, 413, 808
FatI	CATG	1 cut(s)	208
FauI	CCCGC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	368, 371, 555
FokI	GGATG	2 cut(s)	307, 457
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	368, 371, 555
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	378, 553
GluI	GCNGC	3 cut(s)	368, 371, 555
GsaI	CCCAGC	2 cut(s)	11, 638
GsuI	CTGGAG	1 cut(s)	437
HaeII	RGCGCY	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	289, 389, 591
HapII	CCGG	7 cut(s)	305, 311, 756, 763, 777, 798, 845
HgaI	GACGC	1 cut(s)	742
HhaI	GCGC	2 cut(s)	379, 554
Hin1I	GRCGYC	1 cut(s)	734
Hin1II	CATG	1 cut(s)	212
Hin6I	GCGC	2 cut(s)	377, 552
HinP1I	GCGC	2 cut(s)	377, 552
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HpaII	CCGG	7 cut(s)	305, 311, 756, 763, 777, 798, 845
HphI	GGTGA	4 cut(s)	553, 740, 787, 834
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	209, 406
Hpy8I	GTNNAC	1 cut(s)	342
Hpy99I	CGWCG	6 cut(s)	343, 466, 497, 500, 736, 807
HpyAV	CCTTC	1 cut(s)	300
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	2 cut(s)	101, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	3 cut(s)	188, 548, 605
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	1 cut(s)	734
Hsp92II	CATG	1 cut(s)	212
HspAI	GCGC	2 cut(s)	377, 552
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
LmnI	GCTCC	3 cut(s)	417, 519, 658
Lsp1109I	GCAGC	2 cut(s)	354, 357
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	5 cut(s)	214, 559, 746, 772, 840
MalI	GATC	7 cut(s)	146, 280, 576, 584, 621, 632, 794
MbiI	CCGCTC	1 cut(s)	653
MboI	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
MboII	GAAGA	6 cut(s)	92, 95, 98, 193, 285, 327
MhlI	GDGCHC	4 cut(s)	168, 353, 470, 714
MluCI	AATT	2 cut(s)	32, 440
MlyI	GAGTC	7 cut(s)	536, 619, 641, 687, 796, 817, 830
MmeI	TCCRAC	3 cut(s)	602, 647, 785
MnlI	CCTC	4 cut(s)	18, 197, 409, 555
Mph1103I	ATGCAT	1 cut(s)	103
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	703
MspI	CCGG	7 cut(s)	305, 311, 756, 763, 777, 798, 845
MspR9I	CCNGG	2 cut(s)	326, 416
MssI	GTTTAAAC	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	326, 416
MvnI	CGCG	2 cut(s)	377, 783
MwoI	GCNNNNNNNGC	1 cut(s)	376
NdeII	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	4 cut(s)	309, 429, 448, 711
NmuCI	GTSAC	4 cut(s)	559, 746, 772, 840
NsiI	ATGCAT	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	703
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	2 cut(s)	289, 591
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	642, 740, 766
PfoI	TCCNGGA	1 cut(s)	414
PinAI	ACCGGT	2 cut(s)	776, 797
PkrI	GCNGC	3 cut(s)	369, 372, 556
Ple19I	CGATCG	1 cut(s)	281
PleI	GAGTC	7 cut(s)	535, 619, 641, 687, 795, 816, 829
PmeI	GTTTAAAC	1 cut(s)	109
PpsI	GAGTC	7 cut(s)	535, 619, 641, 687, 795, 816, 829
Psp6I	CCWGG	2 cut(s)	324, 414
PspEI	GGTNACC	1 cut(s)	840
PspFI	CCCAGC	2 cut(s)	7, 634
PspGI	CCWGG	2 cut(s)	324, 414
PspN4I	GGNNCC	4 cut(s)	309, 429, 448, 711
PspPI	GGNCC	2 cut(s)	427, 447
PstNI	CAGNNNCTG	2 cut(s)	195, 367
PvuI	CGATCG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	703
SalI	GTCGAC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	368, 371, 555
Sau3AI	GATC	7 cut(s)	144, 278, 574, 582, 619, 630, 792
Sau96I	GGNCC	2 cut(s)	427, 447
SchI	GAGTC	7 cut(s)	536, 619, 641, 687, 796, 817, 830
ScrFI	CCNGG	2 cut(s)	326, 416
SduI	GDGCHC	4 cut(s)	168, 353, 470, 714
SetI	ASST	8 cut(s)	43, 189, 347, 414, 426, 501, 547, 861
SfaNI	GCATC	1 cut(s)	263
SinI	GGWCC	2 cut(s)	427, 447
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	32, 440
SseBI	AGGCCT	2 cut(s)	289, 591
SsiI	CCGC	5 cut(s)	555, 651, 783, 812, 853
SspMI	CTAG	1 cut(s)	380
StuI	AGGCCT	2 cut(s)	289, 591
StyD4I	CCNGG	2 cut(s)	324, 414
StyI	CCWWGG	1 cut(s)	586
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	6 cut(s)	72, 281, 341, 464, 645, 731
TasI	AATT	2 cut(s)	32, 440
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	3 cut(s)	642, 740, 766
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	3 cut(s)	577, 777, 842
TseFI	GTSAC	4 cut(s)	559, 746, 772, 840
TseI	GCWGC	2 cut(s)	367, 370
Tsp45I	GTSAC	4 cut(s)	559, 746, 772, 840
TspRI	CASTG	3 cut(s)	577, 777, 842
VpaK11BI	GGWCC	2 cut(s)	427, 447
XapI	RAATTY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	341
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.