Rmu_sc0000424.1_g000026

ELL-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000424.1
N/A
Physical Location & Seq
Forward (+)
111667 .. 111909
243 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 243 bp
atgcctcatcagaacgagattgatgatgagattgctgatgtagatgttagtggtgatgaagttgataagggcccaaatgctgcagaagcccttcgagcccaggtgaatgcggaggagagtcatgagcagacttcttcttctagtagcagcagtggaagtgggagcagcagtggaagtggtagcaccagcagcagcagtgacagtgaagccagcgatgatgattctgccgtcaactcaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EAF

Protein Analysis

80

Amino Acids

7.99

Weight (kDa)

4.05

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AjnI CCWGG 1 cut(s) 99
AoxI GGCC 1 cut(s) 70
ApaI GGGCCC 1 cut(s) 74
ApeKI GCWGC 5 cut(s) 80, 147, 165, 189, 192
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 70, 71
AsuHPI GGTGA 2 cut(s) 65, 115
BaeGI GKGCMC 1 cut(s) 74
BanII GRGCYC 2 cut(s) 74, 100
BbvI GCAGC 5 cut(s) 67, 159, 177, 201, 204
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 101
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 81
BisI GCNGC 5 cut(s) 81, 148, 166, 190, 193
BlsI GCNGC 5 cut(s) 82, 149, 167, 191, 194
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 70, 71
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 74
BseXI GCAGC 5 cut(s) 67, 159, 177, 201, 204
BshFI GGCC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 72
Bsp120I GGGCCC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 74, 100
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 72
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 211
BstMWI GCNNNNNNNGC 3 cut(s) 86, 95, 189
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 74
BstV1I GCAGC 5 cut(s) 67, 159, 177, 201, 204
BsuRI GGCC 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 228
BtsI GCAGTG 3 cut(s) 157, 175, 202
BtsIMutI CAGTG 4 cut(s) 157, 175, 202, 208
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 70, 71
CviAII CATG 1 cut(s) 122
CviJI RGCY 4 cut(s) 72, 89, 98, 209
CviKI_1 RGCY 4 cut(s) 72, 89, 98, 209
Eco24I GRGCYC 2 cut(s) 74, 100
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 74, 100
FaeI CATG 1 cut(s) 125
FaiI YATR 1 cut(s) 123
FatI CATG 1 cut(s) 121
Fnu4HI GCNGC 5 cut(s) 81, 148, 166, 190, 193
FriOI GRGCYC 2 cut(s) 74, 100
Fsp4HI GCNGC 5 cut(s) 81, 148, 166, 190, 193
FspBI CTAG 1 cut(s) 141
GluI GCNGC 5 cut(s) 81, 148, 166, 190, 193
HaeIII GGCC 1 cut(s) 72
Hin1II CATG 1 cut(s) 125
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 118, 221
HphI GGTGA 2 cut(s) 65, 115
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 2 cut(s) 12, 242
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 95, 189
Hsp92II CATG 1 cut(s) 125
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 86, 113, 199, 223
Lsp1109I GCAGC 5 cut(s) 67, 159, 177, 201, 204
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 197
MboII GAAGA 2 cut(s) 126, 129
MhlI GDGCHC 2 cut(s) 74, 100
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 2 cut(s) 15, 106
MroXI GAANNNNTTC 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 3 cut(s) 86, 95, 189
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 197
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 221
PkrI GCNGC 5 cut(s) 82, 149, 167, 191, 194
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 72
PspOMI GGGCCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 70, 71
PstI CTGCAG 1 cut(s) 85
SatI GCNGC 5 cut(s) 81, 148, 166, 190, 193
Sau96I GGNCC 2 cut(s) 70, 71
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 2 cut(s) 74, 100
SetI ASST 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 8 cut(s) 28, 107, 112, 113, 134, 153, 198, 222
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 94
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 4 cut(s) 157, 175, 202, 208
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 5 cut(s) 80, 147, 165, 189, 192
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 4 cut(s) 157, 175, 202, 208
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.