Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000424.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

140933 .. 141478

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggcggctgttgctgtcacagcttctcaacccctggcagctgccatctctgctgcattttactcattgtggaatctattctctggtttcctcgtccccaaaccaaacatcccggtatggtggctttggttttactacatctccccagttgcatggacactcagaggtattatcacttcccaacttggtgatgtggagaccattcttgtcggacctgcgtttaagggcaccttgaaagaatacttggaagtcagccttggctatggccctgggatgattggagtttcagtagctgtgcttctgggcttcaacgtccttttgttcagtatctttgccttctccatcaaatttctcaacttccagagaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

123

Amino Acids

13.54

Weight (kDa)

9.45

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC2_membrane	PF01061	2 - 61	6.8e-13	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	235, 310
AjnI	CCWGG	2 cut(s)	33, 268
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 240, 259, 272
AluBI	AGCT	3 cut(s)	23, 41, 293
AluI	AGCT	3 cut(s)	23, 41, 293
Alw26I	GTCTC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	3 cut(s)	38, 41, 53
ApoI	RAATTY	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	212, 266
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	4 cut(s)	160, 192, 282, 314
BbvI	GCAGC	3 cut(s)	28, 40, 50
BccI	CCATC	2 cut(s)	53, 350
BciT130I	CCWGG	2 cut(s)	35, 270
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	4 cut(s)	6, 39, 42, 54
BlsI	GCNGC	4 cut(s)	7, 40, 43, 55
Bme1390I	CCNGG	3 cut(s)	35, 113, 270
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	212, 266
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	35, 113, 270
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	4 cut(s)	33, 256, 268, 269
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 273, 303
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	35, 270
BseDI	CCNNGG	4 cut(s)	33, 256, 268, 269
BseGI	GGATG	2 cut(s)	108, 279
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	3 cut(s)	28, 40, 50
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	223
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	4 cut(s)	33, 256, 268, 269
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	35, 270
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	108, 279
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 50
BstNI	CCWGG	2 cut(s)	35, 270
BstSCI	CCNGG	3 cut(s)	33, 111, 268
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	28, 40, 50
BstXI	CCANNNNNNTGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	108, 279
BveI	ACCTGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	212, 266
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	9 cut(s)	8, 23, 41, 124, 255, 261, 267, 293, 306
CviKI_1	RGCY	9 cut(s)	8, 23, 41, 124, 255, 261, 267, 293, 306
DdeI	CTNAG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	33, 268
EcoT14I	CCWWGG	1 cut(s)	256
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	1 cut(s)	156
FaiI	YATR	3 cut(s)	118, 154, 264
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 240, 272
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	6, 39, 42, 54
FokI	GGATG	2 cut(s)	95, 286
Fsp4HI	GCNGC	4 cut(s)	6, 39, 42, 54
GluI	GCNGC	4 cut(s)	6, 39, 42, 54
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	1 cut(s)	156
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	164, 212
Hpy188III	TCNNGA	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	56, 152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 50
HpyF3I	CTNAG	1 cut(s)	161
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	156
LpnPI	CCDG	9 cut(s)	20, 47, 69, 126, 159, 228, 255, 282, 287
Lsp1109I	GCAGC	3 cut(s)	28, 40, 50
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	1 cut(s)	347
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	101, 158
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	3 cut(s)	35, 113, 270
MvaI	CCWGG	2 cut(s)	35, 270
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 50
NciI	CCSGG	1 cut(s)	113
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	16
PasI	CCCWGGG	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	7, 40, 43, 55
Psp6I	CCWGG	2 cut(s)	33, 268
PspGI	CCWGG	2 cut(s)	33, 268
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	2 cut(s)	212, 266
PstNI	CAGNNNCTG	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	6, 39, 42, 54
Sau96I	GGNCC	2 cut(s)	212, 266
ScrFI	CCNGG	3 cut(s)	35, 113, 270
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	7 cut(s)	25, 43, 169, 217, 233, 295, 315
SinI	GGWCC	1 cut(s)	212
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	3 cut(s)	33, 111, 268
StyI	CCWWGG	1 cut(s)	256
TaiI	ACGT	1 cut(s)	315
TasI	AATT	1 cut(s)	347
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	38, 41, 53
Tsp45I	GTSAC	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.