Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000427.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

148377 .. 148694

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggctgtcgtggtgttgcacgacgccgtttccggtggcggtggaggaggccgggcgggatgcatgacgagccacgacgtcgtcggagggagtttggagagctacatgtactacgtgtctcgtcgtacggtgatggagatgctgaacgaccgaggctacaacgtcgccgactcggacctcactcgctcgctcactgagttccgtaccgcgttcggccaaaaccctgacctcgactgcctcaccatctgcgcctctctccgctccaattccaagaacaaggtgcctcttcttttcttccatctctctccatattcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0030880 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055029 GO:0061695 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

105

Amino Acids

11.39

Weight (kDa)

6.24

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb5_N	PF03871	33 - 98	3.9e-16	RNA polymerase Rpb5, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	1 cut(s)	209
AciI	CCGC	4 cut(s)	39, 56, 207, 259
AcoI	YGGCCR	1 cut(s)	214
AcyI	GRCGYC	2 cut(s)	24, 78
AfaI	GTAC	3 cut(s)	110, 127, 205
AflIII	ACRYGT	2 cut(s)	105, 114
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	49, 214
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	142, 232
AvaII	GGWCC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	280
BccI	CCATC	3 cut(s)	127, 251, 306
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	50, 129
BpuMI	CCSGG	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	115
BsaHI	GRCGYC	2 cut(s)	24, 78
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	209
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	2 cut(s)	51, 216
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	33, 52
BsiWI	CGTACG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	51, 216
BspACI	CCGC	4 cut(s)	39, 56, 207, 259
BspANI	GGCC	2 cut(s)	51, 216
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	151
BssNI	GRCGYC	2 cut(s)	24, 78
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	2 cut(s)	24, 78
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	1 cut(s)	251
BstMAI	GTCTC	1 cut(s)	123
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	51, 216
BtsCI	GGATG	1 cut(s)	65
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	3 cut(s)	109, 126, 204
CviAII	CATG	2 cut(s)	64, 106
CviJI	RGCY	6 cut(s)	5, 51, 72, 102, 156, 216
CviKI_1	RGCY	6 cut(s)	5, 51, 72, 102, 156, 216
CviQI	GTAC	3 cut(s)	109, 126, 204
DdeI	CTNAG	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	175
EcoT22I	ATGCAT	1 cut(s)	65
FaeI	CATG	2 cut(s)	67, 109
FaiI	YATR	4 cut(s)	65, 107, 310, 316
FatI	CATG	2 cut(s)	63, 105
FauI	CCCGC	1 cut(s)	49
FokI	GGATG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	51, 216
HapII	CCGG	2 cut(s)	33, 52
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	2 cut(s)	24, 78
Hin1II	CATG	2 cut(s)	67, 109
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	2 cut(s)	33, 52
HphI	GGTGA	2 cut(s)	142, 232
Hpy188I	TCNGA	2 cut(s)	86, 175
Hpy99I	CGWCG	6 cut(s)	26, 80, 83, 86, 126, 167
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	78, 114, 162
HpyCH4V	TGCA	2 cut(s)	19, 63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	3 cut(s)	78, 114, 162
Hsp92I	GRCGYC	2 cut(s)	24, 78
Hsp92II	CATG	2 cut(s)	67, 109
HspAI	GCGC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	3 cut(s)	46, 65, 237
LweI	GCATC	2 cut(s)	50, 129
MaeII	ACGT	3 cut(s)	78, 114, 162
MbiI	CCGCTC	1 cut(s)	261
MboII	GAAGA	2 cut(s)	278, 286
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	9 cut(s)	38, 41, 80, 146, 188, 239, 248, 262, 294
Mph1103I	ATGCAT	1 cut(s)	65
MspI	CCGG	2 cut(s)	33, 52
MspR9I	CCNGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	2 cut(s)	67, 109
NlaIV	GGNNCC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
Pfl23II	CGTACG	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	115
PscI	ACATGT	1 cut(s)	105
PspLI	CGTACG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	3 cut(s)	110, 127, 205
RsaNI	GTAC	3 cut(s)	109, 126, 204
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	7 cut(s)	81, 104, 117, 165, 180, 231, 282
SfaNI	GCATC	2 cut(s)	50, 129
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	265
SsiI	CCGC	4 cut(s)	39, 56, 207, 259
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	3 cut(s)	81, 117, 165
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	165
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	108
TscAI	CASTG	1 cut(s)	199
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	109
ZraI	GACGTC	1 cut(s)	79
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.