Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000429.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

326220 .. 327312

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggcgccacagcaatcggagcggaagccagccactactggctcgttcgagacgggaatgacaatgacagagaagatattggctagggcttctgagaaacccgaattgagcccaggtgacaatgtttgggttaacattgatgttttgatgacccatgacgtgtgtggccctggttcatttggaatcttcaagaaagagtttggacagaatgcaaaggctaacccagattacaagggcgtatgccatgttgctcttgctcaagaaggtcattgcaggcctggagaggtgctgcaaggtacagattctcacacctgcaccgctggagcttttggacaatttgctactggaatcgggaatactgatgcaggtttcgtattgggcactgggaagcttttgctcaaggtttgcggatgttgcatttttgttttcattctctctaatctcatgtctgatagattttatgcaaatgacatgattccacggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0016143 GO:0016144 GO:0016853 GO:0016866 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046686 GO:0050486 GO:0050896 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase

Protein Analysis

162

Amino Acids

17.35

Weight (kDa)

6.05

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase	PF00330	65 - 136	4.8e-14	Aconitase family (aconitate hydratase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	320
Acc36I	ACCTGC	2 cut(s)	320, 356
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	3 cut(s)	22, 318, 408
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	3 cut(s)	112, 169, 277
AluBI	AGCT	2 cut(s)	326, 391
AluI	AGCT	2 cut(s)	326, 391
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	166, 275
ApeKI	GCWGC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	276
BciT130I	CCWGG	3 cut(s)	114, 171, 279
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	2 cut(s)	320, 356
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	3 cut(s)	114, 171, 279
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	114, 171, 279
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	393
BpmI	CTGGAG	2 cut(s)	300, 342
BpuEI	CTTGAG	2 cut(s)	243, 383
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	112, 169, 479
Bse1I	ACTGG	3 cut(s)	43, 349, 388
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	114, 171, 279
BseDI	CCNNGG	3 cut(s)	112, 169, 479
BseGI	GGATG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	3 cut(s)	43, 349, 388
BseSI	GKGCMC	1 cut(s)	383
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	168, 277
BshNI	GGYRCC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	168, 277
Bsp1286I	GDGCHC	2 cut(s)	113, 383
BspACI	CCGC	3 cut(s)	22, 318, 408
BspANI	GGCC	2 cut(s)	168, 277
BspCNI	CTCAG	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	320, 356
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	43, 349, 388
BssECI	CCNNGG	3 cut(s)	112, 169, 479
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	3 cut(s)	114, 171, 279
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	30, 275
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	479
BstF5I	GGATG	1 cut(s)	416
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 414
BstNI	CCWGG	3 cut(s)	114, 171, 279
BstSCI	CCNGG	3 cut(s)	112, 169, 277
BstSLI	GKGCMC	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	168, 277
BtgI	CCRYGG	1 cut(s)	479
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	381
BveI	ACCTGC	2 cut(s)	320, 356
Cac8I	GCNNGC	2 cut(s)	30, 275
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	4 cut(s)	155, 245, 445, 472
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	112, 169, 277
EcoT38I	GRGCYC	1 cut(s)	113
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	4 cut(s)	158, 248, 448, 475
FaiI	YATR	6 cut(s)	156, 241, 246, 446, 462, 473
FatI	CATG	4 cut(s)	154, 244, 444, 471
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	290
GsuI	CTGGAG	2 cut(s)	300, 342
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	168, 277
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	158, 248, 448, 475
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	4 cut(s)	183, 302, 348, 475
HpaI	GTTAAC	1 cut(s)	133
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	19, 94, 451
Hpy188III	TCNNGA	4 cut(s)	49, 190, 260, 352
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	7 cut(s)	212, 273, 292, 315, 365, 417, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 414
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	158, 248, 448, 475
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
KspAI	GTTAAC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	19, 323
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	116
MbiI	CCGCTC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	85, 178
MhlI	GDGCHC	2 cut(s)	113, 383
MluCI	AATT	2 cut(s)	104, 335
Mly113I	GGCGCC	1 cut(s)	5
MnlI	CCTC	1 cut(s)	277
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	3 cut(s)	114, 171, 279
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	3 cut(s)	114, 171, 279
MwoI	GCNNNNNNNGC	2 cut(s)	19, 414
NarI	GGCGCC	1 cut(s)	5
NlaIII	CATG	4 cut(s)	158, 248, 448, 475
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	116
PaqCI	CACCTGC	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	277
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	183, 302, 348, 475
PkrI	GCNGC	1 cut(s)	291
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	3 cut(s)	112, 169, 277
PspGI	CCWGG	3 cut(s)	112, 169, 277
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	1 cut(s)	290
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	3 cut(s)	114, 171, 279
SduI	GDGCHC	2 cut(s)	113, 383
SfaNI	GCATC	1 cut(s)	352
SfoI	GGCGCC	1 cut(s)	6
SmlI	CTYRAG	2 cut(s)	258, 398
SmoI	CTYRAG	2 cut(s)	258, 398
Sse9I	AATT	2 cut(s)	104, 335
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	3 cut(s)	22, 318, 408
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	277
StyD4I	CCNGG	3 cut(s)	112, 169, 277
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	104, 335
TfiI	GAWTC	4 cut(s)	183, 302, 348, 475
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	165, 418
TspRI	CASTG	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.