Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000433.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

74846 .. 75358

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000433.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggtttcctctagatttccatcgatattactctctctcattctgttactcctgaccatcatccctcaaacccttgcttttctatacaatgaatgcgtagatgacaaaggcaatgacacacctaatagcacgtatgaagaaaacctcaaaacgcttctctcctctcttcccgctagcaacggtaacggctatggattttacaattcttcctatggcagcggggaaagctctaaagatcaagttcatgtaattgcgctttgcagaggcgctttgcaagataatatagctgataggccaaccatggcatctatcatcctcatgcttaatagctactctctcagtctcccactaccctcacaaccagcatttttcatgcatagcaatgttggatcggacatgcgtttgggttgggaggataattcaggggtgacagggtcatccgatcgatccaagagcaactctgccaaagcgtcggacaatgaggtttcctataccgaactatatcctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

170

Amino Acids

18.49

Weight (kDa)

4.74

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 219
AclWI	GGATC	2 cut(s)	397, 441
AluBI	AGCT	3 cut(s)	228, 287, 330
AluI	AGCT	3 cut(s)	228, 287, 330
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	397, 441
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	256, 269
AsuHPI	GGTGA	1 cut(s)	439
AsuNHI	GCTAGC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	2 cut(s)	28, 65
BceAI	ACGGC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	3 cut(s)	12, 174, 511
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
BmsI	GCATC	1 cut(s)	314
BmtI	GCTAGC	1 cut(s)	177
Bsa29I	ATCGAT	2 cut(s)	23, 445
BsaAI	YACGTR	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	118, 388
Bse8I	GATNNNNATC	1 cut(s)	19
BseCI	ATCGAT	2 cut(s)	23, 445
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	60, 312, 437
BseJI	GATNNNNATC	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	118, 388
BseMII	CTCAG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	295
BshVI	ATCGAT	2 cut(s)	23, 445
BsiEI	CGRYCG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	235, 389, 442, 446
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	2 cut(s)	171, 219
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	2 cut(s)	23, 445
BspOI	GCTAGC	1 cut(s)	177
BspPI	GGATC	2 cut(s)	397, 441
BsrDI	GCAATG	2 cut(s)	118, 388
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	235, 389, 442, 446
BssT1I	CCWWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	3 cut(s)	60, 312, 437
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	256, 269
BstKTI	GATC	4 cut(s)	238, 392, 445, 449
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	4 cut(s)	235, 389, 442, 446
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	228
Bsu15I	ATCGAT	2 cut(s)	23, 445
BsuRI	GGCC	1 cut(s)	295
BsuTUI	ATCGAT	2 cut(s)	23, 445
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	60, 312, 437
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	2 cut(s)	256, 269
ClaI	ATCGAT	2 cut(s)	23, 445
CseI	GACGC	1 cut(s)	459
CviAII	CATG	5 cut(s)	245, 301, 319, 373, 397
CviJI	RGCY	5 cut(s)	189, 228, 287, 295, 330
CviKI_1	RGCY	5 cut(s)	189, 228, 287, 295, 330
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	4 cut(s)	237, 391, 444, 448
DpnII	GATC	4 cut(s)	235, 389, 442, 446
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	5 cut(s)	248, 304, 322, 376, 400
FatI	CATG	5 cut(s)	244, 300, 318, 372, 396
FauI	CCCGC	2 cut(s)	178, 212
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	3 cut(s)	47, 299, 424
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	3 cut(s)	12, 174, 511
GlaI	GCGC	2 cut(s)	255, 268
GluI	GCNGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	295
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	256, 269
Hin1II	CATG	5 cut(s)	248, 304, 322, 376, 400
Hin6I	GCGC	2 cut(s)	254, 267
HinP1I	GCGC	2 cut(s)	254, 267
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	394, 442, 475
Hpy188III	TCNNGA	2 cut(s)	12, 52
Hpy99I	CGWCG	1 cut(s)	475
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	261, 274, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	248, 304, 322, 376, 400
HspAI	GCGC	2 cut(s)	254, 267
Kzo9I	GATC	4 cut(s)	235, 389, 442, 446
LpnPI	CCDG	4 cut(s)	65, 375, 408, 417
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	3 cut(s)	12, 174, 511
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	3 cut(s)	45, 182, 427
MalI	GATC	4 cut(s)	237, 391, 444, 448
MboI	GATC	4 cut(s)	235, 389, 442, 446
MboII	GAAGA	3 cut(s)	149, 158, 198
MluCI	AATT	3 cut(s)	202, 249, 418
MmeI	TCCRAC	2 cut(s)	367, 453
MnlI	CCTC	9 cut(s)	19, 75, 155, 172, 257, 326, 364, 406, 475
Mph1103I	ATGCAT	1 cut(s)	378
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	317, 381
MspA1I	CMGCKG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	4 cut(s)	235, 389, 442, 446
NheI	GCTAGC	1 cut(s)	173
NlaIII	CATG	5 cut(s)	248, 304, 322, 376, 400
NmuCI	GTSAC	1 cut(s)	427
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	1 cut(s)	400
PctI	GAATGC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	218
Ple19I	CGATCG	1 cut(s)	445
Ppu21I	YACGTR	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	433
PvuI	CGATCG	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	317, 381
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	4 cut(s)	235, 389, 442, 446
SetI	ASST	7 cut(s)	124, 134, 147, 230, 289, 332, 486
SfaNI	GCATC	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	317, 381
Sse9I	AATT	3 cut(s)	202, 249, 418
SsiI	CCGC	2 cut(s)	171, 219
SspMI	CTAG	3 cut(s)	12, 174, 511
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	23, 445
TasI	AATT	3 cut(s)	202, 249, 418
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	4 cut(s)	105, 150, 233, 361
Tth111I	GACNNNGTC	1 cut(s)	433
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	3 cut(s)	12, 174, 511
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.