Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

249223 .. 249681

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atgcgcaaaacagcagccaagtccaaaactgtatcatctggcagcccatggtacggtgcagaccgtgtcaagtacttgggtccattctccagtgagtttcccggagactacggttgggacactgctgggctatcagcggatcccgagacctttgccaaaaaccatgaccttgaggtcatccattccagatgggccatgctcggagtcaagtttggcgaagctgttaggttcaaggctggagcccagatattcagggctagattacttgggaaacccaagcttagaccatgcccaaagcattttggcaatctgggcaacacaagtgatctgatgggcgcggttgaaggctacagaatagctggtgggcctctcggtgaggtggtggacccattgtaccccggagggagtttcgacccgttaggccttgcggaagatccagaagcttttgctgagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

152

Amino Acids

16.36

Weight (kDa)

6.83

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	32 - 151	4.5e-18	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	1 cut(s)	338
AciI	CCGC	3 cut(s)	137, 338, 428
AclWI	GGATC	3 cut(s)	134, 147, 428
AfaI	GTAC	3 cut(s)	53, 74, 395
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	232, 344
AluBI	AGCT	5 cut(s)	221, 280, 359, 443, 454
AluI	AGCT	5 cut(s)	221, 280, 359, 443, 454
Alw26I	GTCTC	2 cut(s)	99, 140
AlwI	GGATC	3 cut(s)	134, 147, 428
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	192, 365, 421
ApeKI	GCWGC	2 cut(s)	14, 42
AspLEI	GCGC	2 cut(s)	6, 338
AspS9I	GGNCC	4 cut(s)	80, 192, 365, 385
AsuC2I	CCSGG	2 cut(s)	102, 399
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	80, 385
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	26, 54
BccI	CCATC	2 cut(s)	183, 325
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BcnI	CCSGG	2 cut(s)	102, 399
BcoDI	GTCTC	2 cut(s)	99, 140
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	349
BisI	GCNGC	2 cut(s)	15, 43
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	2 cut(s)	16, 44
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	102, 399
Bme18I	GGWCC	2 cut(s)	80, 385
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	4 cut(s)	80, 192, 365, 385
BmiI	GGNNCC	4 cut(s)	81, 141, 241, 387
BmrFI	CCNGG	2 cut(s)	102, 399
BpmI	CTGGAG	2 cut(s)	73, 258
Bpu1102I	GCTNAGC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	2 cut(s)	102, 399
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	47, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	47, 397
BseGI	GGATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	26, 54
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	3 cut(s)	194, 367, 423
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	102, 399
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	99, 140
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	194, 367, 423
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp143I	GATC	3 cut(s)	139, 325, 433
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	137, 338, 428
BspANI	GGCC	3 cut(s)	194, 367, 423
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	4 cut(s)	81, 141, 241, 387
BspPI	GGATC	3 cut(s)	134, 147, 428
BspTNI	GGTCTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	47, 397
BssMI	GATC	3 cut(s)	139, 325, 433
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	4 cut(s)	31, 56, 65, 113
BstDEI	CTNAG	2 cut(s)	281, 450
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	2 cut(s)	6, 338
BstKTI	GATC	3 cut(s)	142, 328, 436
BstMAI	GTCTC	2 cut(s)	99, 140
BstMBI	GATC	3 cut(s)	139, 325, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstSCI	CCNGG	2 cut(s)	100, 397
BstSFI	CTRYAG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	26, 54
BstX2I	RGATCY	2 cut(s)	139, 433
BstYI	RGATCY	2 cut(s)	139, 433
BsuRI	GGCC	3 cut(s)	194, 367, 423
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	97, 120
CfoI	GCGC	2 cut(s)	6, 338
Cfr13I	GGNCC	4 cut(s)	80, 192, 365, 385
Csp6I	GTAC	3 cut(s)	52, 73, 394
CviAII	CATG	4 cut(s)	48, 164, 196, 288
CviQI	GTAC	3 cut(s)	52, 73, 394
DdeI	CTNAG	2 cut(s)	281, 450
DpnI	GATC	3 cut(s)	141, 327, 435
DpnII	GATC	3 cut(s)	139, 325, 433
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	423
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	2 cut(s)	80, 385
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	4 cut(s)	51, 167, 199, 291
FaiI	YATR	4 cut(s)	49, 165, 197, 289
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	47, 163, 195, 287
Fnu4HI	GCNGC	2 cut(s)	15, 43
FokI	GGATG	1 cut(s)	164
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	2 cut(s)	15, 43
FspBI	CTAG	1 cut(s)	258
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 337
GluI	GCNGC	2 cut(s)	15, 43
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	73, 258
HaeIII	GGCC	3 cut(s)	194, 367, 423
HapII	CCGG	2 cut(s)	102, 399
HhaI	GCGC	2 cut(s)	6, 338
Hin1II	CATG	4 cut(s)	51, 167, 199, 291
Hin6I	GCGC	2 cut(s)	4, 336
HinP1I	GCGC	2 cut(s)	4, 336
HindIII	AAGCTT	2 cut(s)	278, 441
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	2 cut(s)	102, 399
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	2 cut(s)	203, 330
Hpy188III	TCNNGA	3 cut(s)	143, 186, 437
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	4 cut(s)	31, 56, 65, 113
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	2 cut(s)	281, 450
Hsp92II	CATG	4 cut(s)	51, 167, 199, 291
HspAI	GCGC	2 cut(s)	4, 336
Kzo9I	GATC	3 cut(s)	139, 325, 433
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	2 cut(s)	26, 54
MaeI	CTAG	1 cut(s)	258
MalI	GATC	3 cut(s)	141, 327, 435
MboI	GATC	3 cut(s)	139, 325, 433
MboII	GAAGA	1 cut(s)	443
MflI	RGATCY	2 cut(s)	139, 433
MhlI	GDGCHC	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	166, 370, 378, 395
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	102, 399
MspR9I	CCNGG	2 cut(s)	102, 399
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	312
NciI	CCSGG	2 cut(s)	102, 399
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	139, 325, 433
NlaIII	CATG	4 cut(s)	51, 167, 199, 291
NlaIV	GGNNCC	4 cut(s)	81, 141, 241, 387
NsbI	TGCGCA	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	423
PflFI	GACNNNGTC	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	16, 44
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	4 cut(s)	81, 141, 241, 387
PspPI	GGNCC	4 cut(s)	80, 192, 365, 385
PsuI	RGATCY	2 cut(s)	139, 433
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	3 cut(s)	53, 74, 395
RsaNI	GTAC	3 cut(s)	52, 73, 394
SatI	GCNGC	2 cut(s)	15, 43
Sau3AI	GATC	3 cut(s)	139, 325, 433
Sau96I	GGNCC	4 cut(s)	80, 192, 365, 385
ScaI	AGTACT	1 cut(s)	74
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	102, 399
SduI	GDGCHC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	2 cut(s)	80, 385
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	3 cut(s)	137, 338, 428
SspMI	CTAG	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	100, 397
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	31, 56, 65, 113
TaqI	TCGA	1 cut(s)	411
TatI	WGTACW	1 cut(s)	72
TscAI	CASTG	2 cut(s)	97, 127
TseI	GCWGC	2 cut(s)	14, 42
TspRI	CASTG	2 cut(s)	97, 127
Tth111I	GACNNNGTC	1 cut(s)	65
VpaK11BI	GGWCC	2 cut(s)	80, 385
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.