Rmu_sc0000444.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000444.1
N/A
Physical Location & Seq
Forward (+)
22631 .. 22944
314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
atgaaagttggcggcggagtagtgtacggacgtcctcgagccactgctcttcccactgtgcttcttggccatggcagagctagtccacgctgttcttattcctcttccagttctgaccatgtgtctttcattaaggaggtggcaggaactcagcctccacagcatttgagccagctgctgaaaatgctcaagaccagaggtgggtcatcattgttttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

7.7

Weight (kDa)

10.3

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 34
AciI CCGC 2 cut(s) 12, 15
AcoI YGGCCR 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 31
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 201
AhdI GACNNNNNGTC 1 cut(s) 121
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 2 cut(s) 80, 175
AluI AGCT 2 cut(s) 80, 175
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 36
BalI TGGCCA 1 cut(s) 69
BbvI GCAGC 1 cut(s) 162
BfaI CTAG 1 cut(s) 81
BisI GCNGC 2 cut(s) 13, 176
BlsI GCNGC 2 cut(s) 14, 177
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 162
BshFI GGCC 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 201
BsnI GGCC 1 cut(s) 69
BsoBI CYCGRG 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 2 cut(s) 12, 15
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 54
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 54, 109
BstACI GRCGYC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 70
BstMWI GCNNNNNNNGC 2 cut(s) 160, 184
BstV1I GCAGC 1 cut(s) 162
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 54
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 178
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 2 cut(s) 71, 119
CviJI RGCY 6 cut(s) 41, 69, 80, 154, 171, 175
CviKI_1 RGCY 6 cut(s) 41, 69, 80, 154, 171, 175
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 54, 109
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 54, 109
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 2 cut(s) 74, 122
FaiI YATR 2 cut(s) 72, 120
FatI CATG 2 cut(s) 70, 118
Fnu4HI GCNGC 2 cut(s) 13, 176
Fsp4HI GCNGC 2 cut(s) 13, 176
FspBI CTAG 1 cut(s) 81
GluI GCNGC 2 cut(s) 13, 176
HaeIII GGCC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 31
Hin1II CATG 2 cut(s) 74, 122
Hpy166II GTNNAC 2 cut(s) 25, 86
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 2 cut(s) 25, 86
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 184
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 31
Hsp92II CATG 2 cut(s) 74, 122
LguI GCTCTTC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 121, 129, 185, 208
Lsp1109I GCAGC 1 cut(s) 162
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 31
MboII GAAGA 2 cut(s) 41, 96
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MnlI CCTC 5 cut(s) 45, 112, 130, 165, 191
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 2 cut(s) 132, 220
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 160, 184
NcoI CCATGG 1 cut(s) 70
NlaIII CATG 2 cut(s) 74, 122
PaeR7I CTCGAG 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 54
PkrI GCNGC 2 cut(s) 14, 177
PspXI VCTCGAGB 1 cut(s) 36
PstNI CAGNNNCTG 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 132, 220
SatI GCNGC 2 cut(s) 13, 176
SetI ASST 5 cut(s) 34, 82, 141, 177, 202
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 36, 188
SmoI CTYRAG 2 cut(s) 36, 188
SsiI CCGC 2 cut(s) 12, 15
SspMI CTAG 1 cut(s) 81
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 37
TauI GCSGC 1 cut(s) 15
Tru1I TTAA 2 cut(s) 132, 220
Tru9I TTAA 2 cut(s) 132, 220
TscAI CASTG 2 cut(s) 49, 61
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 17, 118
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 49, 61
XhoI CTCGAG 1 cut(s) 36
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.