Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

154953 .. 155471

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgaagttccccacacccaatgggacaggctgtgagaaaggaagtcaacaattggcacgagaatgttattcaacgactgtggcatggtcaacgcgccgccatgagatcctaacagtaggaaaccgtgcgccggcaccaaatatctttgaggaccctagggatgacgagaagaaatatctagacccagaggtagcggcagagctcactcagtttctctgtgacaacgctgccgtctttgcatggtcctatgcggacatgccaggtatctcccctgagatcatcacacacaagttgagcatcaaaccatccttctatcctatcaagcagaggcgaagggccttcgatgaggagaagtatcgtgcaataagggaagaggttgccaagcttcagggcattaggttcatccgccaggtcatttatccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

141

Amino Acids

16.24

Weight (kDa)

8.44

Isoelectric Point (pI)

60.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	97, 194, 251, 406
AclWI	GGATC	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	259, 408
AluBI	AGCT	2 cut(s)	202, 385
AluI	AGCT	2 cut(s)	202, 385
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	227
AspA2I	CCTAGG	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	96, 130
AspS9I	GGNCC	3 cut(s)	151, 243, 336
AvaII	GGWCC	2 cut(s)	151, 243
AvrII	CCTAGG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	215
BciT130I	CCWGG	2 cut(s)	261, 410
BfaI	CTAG	3 cut(s)	156, 179, 424
BisI	GCNGC	3 cut(s)	97, 195, 228
BlnI	CCTAGG	1 cut(s)	155
BlsI	GCNGC	3 cut(s)	98, 196, 229
Bme1390I	CCNGG	2 cut(s)	261, 410
Bme18I	GGWCC	2 cut(s)	151, 243
BmgT120I	GGNCC	3 cut(s)	151, 243, 336
BmiI	GGNNCC	2 cut(s)	135, 153
BmrFI	CCNGG	2 cut(s)	261, 410
BmsI	GCATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse118I	RCCGGY	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	261, 410
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	3 cut(s)	166, 305, 402
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	221, 264
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	105, 276
BspACI	CCGC	4 cut(s)	97, 194, 251, 406
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	2 cut(s)	220, 265
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	135, 153
BspPI	GGATC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	155
BssMI	GATC	2 cut(s)	105, 276
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	261, 410
Bst4CI	ACNGT	3 cut(s)	79, 115, 125
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	207, 273
BstF5I	GGATG	3 cut(s)	166, 305, 402
BstFNI	CGCG	1 cut(s)	94
BstHHI	GCGC	2 cut(s)	96, 130
BstKTI	GATC	2 cut(s)	108, 279
BstMBI	GATC	2 cut(s)	105, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	261, 410
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	2 cut(s)	259, 408
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	166, 305, 402
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	96, 130
Cfr10I	RCCGGY	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	151, 243, 336
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	4 cut(s)	84, 101, 240, 256
CviJI	RGCY	4 cut(s)	30, 202, 338, 385
CviKI_1	RGCY	4 cut(s)	30, 202, 338, 385
DdeI	CTNAG	2 cut(s)	207, 273
DpnI	GATC	2 cut(s)	107, 278
DpnII	GATC	2 cut(s)	105, 276
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	151, 243
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	2 cut(s)	151, 336
EcoRII	CCWGG	2 cut(s)	259, 408
EcoT14I	CCWWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	4 cut(s)	87, 104, 243, 259
FaiI	YATR	5 cut(s)	85, 102, 241, 249, 257
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	4 cut(s)	83, 100, 239, 255
Fnu4HI	GCNGC	3 cut(s)	97, 195, 228
FokI	GGATG	3 cut(s)	173, 292, 389
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	97, 195, 228
FspBI	CTAG	3 cut(s)	156, 179, 424
GlaI	GCGC	2 cut(s)	95, 129
GluI	GCNGC	3 cut(s)	97, 195, 228
HaeIII	GGCC	1 cut(s)	338
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	2 cut(s)	96, 130
Hin1II	CATG	4 cut(s)	87, 104, 243, 259
Hin6I	GCGC	2 cut(s)	94, 128
HinP1I	GCGC	2 cut(s)	94, 128
HincII	GTYRAC	2 cut(s)	47, 90
HindII	GTYRAC	2 cut(s)	47, 90
HindIII	AAGCTT	1 cut(s)	383
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	47, 90
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	47, 90
HpyAV	CCTTC	3 cut(s)	319, 327, 349
HpyCH4III	ACNGT	3 cut(s)	79, 115, 125
HpyCH4V	TGCA	2 cut(s)	239, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	207, 273
Hsp92II	CATG	4 cut(s)	87, 104, 243, 259
HspAI	GCGC	2 cut(s)	94, 128
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	105, 276
LpnPI	CCDG	9 cut(s)	12, 144, 198, 246, 273, 285, 374, 395, 422
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	3 cut(s)	156, 179, 424
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	107, 278
MboI	GATC	2 cut(s)	105, 276
MboII	GAAGA	2 cut(s)	181, 383
MfeI	CAATTG	1 cut(s)	50
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	50
MnlI	CCTC	5 cut(s)	142, 181, 321, 340, 367
MroNI	GCCGGC	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	61
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	2 cut(s)	261, 410
MunI	CAATTG	1 cut(s)	50
MvaI	CCWGG	2 cut(s)	261, 410
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	236
NaeI	GCCGGC	1 cut(s)	132
NdeII	GATC	2 cut(s)	105, 276
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	4 cut(s)	87, 104, 243, 259
NlaIV	GGNNCC	2 cut(s)	135, 153
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	132
PkrI	GCNGC	3 cut(s)	98, 196, 229
PpuMI	RGGWCCY	1 cut(s)	151
Psp124BI	GAGCTC	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	259, 408
PspGI	CCWGG	2 cut(s)	259, 408
PspN4I	GGNNCC	2 cut(s)	135, 153
PspPI	GGNCC	3 cut(s)	151, 243, 336
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	105
RseI	CAYNNNNRTG	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	3 cut(s)	97, 195, 228
Sau3AI	GATC	2 cut(s)	105, 276
Sau96I	GGNCC	3 cut(s)	151, 243, 336
ScrFI	CCNGG	2 cut(s)	261, 410
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	7 cut(s)	192, 204, 265, 378, 387, 401, 414
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	2 cut(s)	151, 243
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	4 cut(s)	97, 194, 251, 406
SspMI	CTAG	3 cut(s)	156, 179, 424
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	259, 408
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	3 cut(s)	79, 115, 125
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	50
TauI	GCSGC	2 cut(s)	99, 197
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	17, 391
VpaK11BI	GGWCC	2 cut(s)	151, 243
XbaI	TCTAGA	1 cut(s)	178
XceI	RCATGY	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	155
XspI	CTAG	3 cut(s)	156, 179, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.