Rmu_sc0000455.1_g000024

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000455.1
N/A
Physical Location & Seq
Reverse (-)
98415 .. 98768
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgtcgaatgaacctagactcgactttcccatgcttgacttaacaggctcggaataccacagttgggtaaccgatattgagcaccacctcacttcaaagggaatattacccataatccaggcacctaacccagatcgtgtgttcgtgcgaacacctacaaagcatgctcaagcagatatcttgatgcgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagatctatgggtagagctagaagagcactttggcaatgtcatccctgacttgaaggttcaatggaacaatctgcgctttgctgatttcaagtctgttgctgaatataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

117

Amino Acids

13.77

Weight (kDa)

5.82

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 4 cut(s) 96, 295, 302, 331
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw21I GWGCWC 2 cut(s) 84, 270
AspLEI GCGC 1 cut(s) 318
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 84, 270
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 15, 260
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 174, 226
BpuEI CTTGAG 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 190
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 2 cut(s) 241, 282
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 84, 270
BslI CCNNNNNNNGG 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 84, 270
Bsp143I GATC 3 cut(s) 133, 228, 244
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 123
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 283
BssMI GATC 3 cut(s) 133, 228, 244
BssNI GRCGYC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 241, 282
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 3 cut(s) 136, 231, 247
BstMBI GATC 3 cut(s) 133, 228, 244
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BtsCI GGATG 2 cut(s) 241, 282
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 1 cut(s) 318
CseI GACGC 1 cut(s) 198
CviAII CATG 2 cut(s) 31, 164
CviJI RGCY 2 cut(s) 48, 259
CviKI_1 RGCY 2 cut(s) 48, 259
DdeI CTNAG 1 cut(s) 209
DpnI GATC 3 cut(s) 135, 230, 246
DpnII GATC 3 cut(s) 133, 228, 244
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco32I GATATC 1 cut(s) 178
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 178
FaeI CATG 2 cut(s) 34, 167
FaiI YATR 9 cut(s) 32, 113, 165, 195, 197, 222, 224, 250, 348
FatI CATG 2 cut(s) 30, 163
FauNDI CATATG 1 cut(s) 195
FokI GGATG 2 cut(s) 248, 269
FspBI CTAG 2 cut(s) 15, 260
GlaI GCGC 1 cut(s) 317
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 190
Hin1II CATG 2 cut(s) 34, 167
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 18
Hpy188I TCNGA 2 cut(s) 52, 212
Hpy188III TCNNGA 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 209
Hsp92I GRCGYC 1 cut(s) 190
Hsp92II CATG 2 cut(s) 34, 167
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 133, 228, 244
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 30, 104, 131, 144, 300
LweI GCATC 2 cut(s) 174, 226
MaeI CTAG 2 cut(s) 15, 260
MaeIII GTNAC 1 cut(s) 67
MalI GATC 3 cut(s) 135, 230, 246
MboI GATC 3 cut(s) 133, 228, 244
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 84, 270
MluCI AATT 1 cut(s) 349
MlyI GAGTC 1 cut(s) 12
MnlI CCTC 1 cut(s) 98
MseI TTAA 2 cut(s) 41, 352
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeI CATATG 1 cut(s) 195
NdeII GATC 3 cut(s) 133, 228, 244
NlaIII CATG 2 cut(s) 34, 167
NlaIV GGNNCC 1 cut(s) 123
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 41, 352
Sau3AI GATC 3 cut(s) 133, 228, 244
SchI GAGTC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 84, 270
SetI ASST 6 cut(s) 16, 90, 127, 157, 261, 300
SfaNI GCATC 2 cut(s) 174, 226
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 349
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 15, 260
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 5, 21, 227
TasI AATT 1 cut(s) 349
Tru1I TTAA 2 cut(s) 41, 352
Tru9I TTAA 2 cut(s) 41, 352
TspDTI ATGAA 1 cut(s) 24
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 15, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.