Rmu_sc0000466.1_g000001

Transmembrane protein 184A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000466.1
N/A
Physical Location & Seq
Reverse (-)
2 .. 1563
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 350 bp
atggcggaatcggaatcggtcccaatctacctgagcattgttgcctttgtttgcactgttggagctattgctctggcagttatgcacatctacaggcacctcatgaattacaccgagccgacttatcagagatacattgtccgcatcatttttatggtcccggtatacgcattaatgtcgttcttatcccttgttatacctgcgggctccatctactttagttccatcagggaagtctatgaagcttgggtcatttacaattttctatcgctgtgcttggcatgggttggtggcccagggtctgttgtcgtaagtttaactggtagggttataaagccttcgtgggctct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

117

Amino Acids

13.1

Weight (kDa)

7.78

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 12 - 114 1.6e-33 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 165
AciI CCGC 3 cut(s) 5, 142, 203
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 2 cut(s) 65, 245
AluI AGCT 2 cut(s) 65, 245
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 292
AseI ATTAAT 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 19, 157, 293
AsuC2I CCSGG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 19, 157
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 2 cut(s) 209, 349
BccI CCATC 2 cut(s) 218, 233
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 161, 297
Bme18I GGWCC 2 cut(s) 19, 157
BmgT120I GGNCC 3 cut(s) 19, 157, 293
BmiI GGNNCC 4 cut(s) 21, 98, 159, 208
BmrFI CCNGG 2 cut(s) 161, 297
BmsI GCATC 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 295, 296
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 295, 296
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 325
BshFI GGCC 1 cut(s) 294
BshNI GGYRCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 5, 143
BsmFI GGGAC 2 cut(s) 5, 143
BsnI GGCC 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 209, 349
BspACI CCGC 3 cut(s) 5, 142, 203
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 4 cut(s) 21, 98, 159, 208
BspMI ACCTGC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 295, 296
BssNAI GTATAC 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 32
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 2 cut(s) 159, 295
BstSFI CTRYAG 1 cut(s) 91
BstZ17I GTATAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 294
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 19, 157, 293
CviAII CATG 2 cut(s) 103, 282
CviJI RGCY 7 cut(s) 65, 118, 207, 245, 294, 337, 347
CviKI_1 RGCY 7 cut(s) 65, 118, 207, 245, 294, 337, 347
DdeI CTNAG 1 cut(s) 32
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 2 cut(s) 209, 349
Eco47I GGWCC 2 cut(s) 19, 157
EcoRII CCWGG 1 cut(s) 295
EcoT38I GRGCYC 2 cut(s) 209, 349
FaeI CATG 2 cut(s) 106, 285
FaiI YATR 8 cut(s) 83, 104, 155, 166, 197, 240, 283, 332
FaqI GGGAC 2 cut(s) 5, 143
FatI CATG 2 cut(s) 102, 281
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 165
FriOI GRGCYC 2 cut(s) 209, 349
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 161
Hin1II CATG 2 cut(s) 106, 285
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 2 cut(s) 8, 14
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 2 cut(s) 13, 129
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 54, 85
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 2 cut(s) 106, 285
LmnI GCTCC 2 cut(s) 62, 212
LpnPI CCDG 9 cut(s) 44, 59, 79, 174, 213, 214, 282, 306, 309
LweI GCATC 1 cut(s) 153
MhlI GDGCHC 2 cut(s) 209, 349
MluCI AATT 2 cut(s) 106, 259
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 1 cut(s) 110
MseI TTAA 2 cut(s) 173, 317
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 161, 297
MvaI CCWGG 1 cut(s) 297
NciI CCSGG 1 cut(s) 161
NlaIII CATG 2 cut(s) 106, 285
NlaIV GGNNCC 4 cut(s) 21, 98, 159, 208
PagI TCATGA 1 cut(s) 102
PasI CCCWGGG 1 cut(s) 296
PfeI GAWTC 2 cut(s) 8, 14
PshBI ATTAAT 1 cut(s) 173
PsiI TTATAA 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 4 cut(s) 21, 98, 159, 208
PspPI GGNCC 3 cut(s) 19, 157, 293
PstNI CAGNNNCTG 1 cut(s) 302
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 173, 317
Sau96I GGNCC 3 cut(s) 19, 157, 293
ScrFI CCNGG 2 cut(s) 161, 297
SduI GDGCHC 2 cut(s) 209, 349
SetI ASST 5 cut(s) 33, 67, 102, 202, 247
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 91
SinI GGWCC 2 cut(s) 19, 157
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 2 cut(s) 106, 259
SsiI CCGC 3 cut(s) 5, 142, 203
StyD4I CCNGG 2 cut(s) 159, 295
TaaI ACNGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 7
TasI AATT 2 cut(s) 106, 259
TfiI GAWTC 2 cut(s) 8, 14
Tru1I TTAA 2 cut(s) 173, 317
Tru9I TTAA 2 cut(s) 173, 317
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 119, 255
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 19, 157
VspI ATTAAT 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.