Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000469.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

67131 .. 71149

Gene Structure 4019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgttcaacactgctggcaaggtgatcaagtgcaaagctgcggtggcctgggaagccgggaagccgctggtcattgaggaagtggatgtggcaccaccacagaaacatgaagtacgcttgaagatcctctttaatgctctatgccacactgatgtatacttctgggaagcaaagggacaaaaacctctgttccctcggattttaggtcatgaagcttcaggaattgtggaaagcgtaggcgagggtgtaactgaactcaaaccgggagaccatgtcctcccggttttcactggagaatgcaaggagtgcacacattgtaagtcagaggaaagcaacttgtgtgaactcctaaggattaatactgacaggggtactatgctcaatgatggcaagacccgatcaaccctgcagcgcctcttgacaaagtttgtgttcttagttgcggagtttgtacaggttcggctgaacaaacttatcacatttaatccttacagtggaatatatatcactggtttctttacttgtagtaatgaatcgttttatatgtgctcaaaaggttttggtgcaactgtaaatgttgcaaagccgaaaaagggttcgtctgttgccattttcggattgggtgctgttggtcttgctgccgcggaaggtgcaagggtttctggggcttcaaggatcattggagttgatctgaactccaaccgatttgaggcaggtatagacaatgccaactcatgttcaggaaatactctgcttcatagaatgttaaaagtgatagctgagatgaccaatggtggagttgataggagtgttgagtgcactgggagcatcgacgctatgatctctgcgtttgaatgtgttcatgatggttggggagttgctgtacttgttggagtgccaaagatagactatgaattcaaaacccatccaatgaacttcttgaatgagaggactctaaagggtgctttctatggtaagtacaagccccgcaccgatctacctggtgttgtggagaagtacatgaacaaggagatggaagtggacaaatttatcactcactctgttcctctctctgagatcaacaaggcatttgagtacatgcgtctaggagagggaatccggtgccttatctgcatggaccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001666 GO:0003674 GO:0003824 GO:0004022 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009410 GO:0009413 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009744 GO:0010033 GO:0010035 GO:0010038 GO:0010243 GO:0014070 GO:0014074 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0031000 GO:0032355 GO:0033993 GO:0034285 GO:0036270 GO:0036293 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0042803 GO:0043279 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0070482 GO:0071944 GO:0080134 GO:0080135 GO:0097305 GO:1900037 GO:1900039 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00071 ko00350 ko00592 ko01100 ko01110 ko01120 map00010 map00071 map00350 map00592 map01100 map01110 map01120

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

381

Amino Acids

41.89

Weight (kDa)

7.51

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	35 - 117	4.4e-19	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	209 - 338	1.9e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	704
AccB1I	GGYRCC	2 cut(s)	91, 1122
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	644
AciI	CCGC	6 cut(s)	41, 65, 443, 642, 644, 988
AclWI	GGATC	2 cut(s)	118, 683
AcsI	RAATTY	2 cut(s)	914, 1046
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	7 cut(s)	114, 373, 453, 885, 980, 1019, 1097
AfiI	CCNNNNNNNGG	3 cut(s)	494, 593, 709
AgsI	TTSAA	6 cut(s)	7, 121, 672, 854, 919, 943
AjnI	CCWGG	2 cut(s)	47, 1000
AluBI	AGCT	3 cut(s)	38, 215, 779
AluI	AGCT	3 cut(s)	38, 215, 779
Alw21I	GWGCWC	3 cut(s)	311, 551, 821
Alw26I	GTCTC	1 cut(s)	261
Alw44I	GTGCAC	2 cut(s)	307, 817
AlwI	GGATC	2 cut(s)	118, 683
AoxI	GGCC	1 cut(s)	45
ApaLI	GTGCAC	2 cut(s)	307, 817
ApeKI	GCWGC	3 cut(s)	38, 409, 638
ApoI	RAATTY	2 cut(s)	914, 1046
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	1138
AsuC2I	CCSGG	3 cut(s)	58, 264, 281
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	1138
AxyI	CCTNAGG	1 cut(s)	350
BaeGI	GKGCMC	2 cut(s)	311, 821
BanI	GGYRCC	2 cut(s)	91, 1122
Bbv12I	GWGCWC	3 cut(s)	311, 551, 821
BbvI	GCAGC	3 cut(s)	25, 421, 625
BccI	CCATC	4 cut(s)	380, 860, 933, 1027
BciT130I	CCWGG	2 cut(s)	49, 1002
BclI	TGATCA	1 cut(s)	24
BcnI	CCSGG	3 cut(s)	58, 264, 281
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	1106
BfmI	CTRYAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	704
BisI	GCNGC	5 cut(s)	39, 65, 410, 639, 642
BlsI	GCNGC	5 cut(s)	40, 66, 411, 640, 643
Bme1390I	CCNGG	5 cut(s)	49, 58, 264, 281, 1002
Bme18I	GGWCC	1 cut(s)	1138
BmgT120I	GGNCC	1 cut(s)	1138
BmiI	GGNNCC	2 cut(s)	93, 1124
BmrFI	CCNGG	5 cut(s)	49, 58, 264, 281, 1002
BmrI	ACTGGG	1 cut(s)	831
BmsI	GCATC	1 cut(s)	837
BmuI	ACTGGG	1 cut(s)	831
BpmI	CTGGAG	1 cut(s)	312
BpuMI	CCSGG	3 cut(s)	58, 264, 281
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	48, 194, 642
BsaWI	WCCGGW	1 cut(s)	1119
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 867, 897
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 593, 709
Bse1I	ACTGG	4 cut(s)	295, 514, 826, 1141
Bse21I	CCTNAGG	1 cut(s)	350
BseBI	CCWGG	2 cut(s)	49, 1002
BseDI	CCNNGG	3 cut(s)	48, 194, 642
BseGI	GGATG	2 cut(s)	91, 925
BseLI	CCNNNNNNNGG	3 cut(s)	494, 593, 709
BseMII	CTCAG	2 cut(s)	771, 1065
BseNI	ACTGG	4 cut(s)	295, 514, 826, 1141
BseSI	GKGCMC	2 cut(s)	311, 821
BseXI	GCAGC	3 cut(s)	25, 421, 625
Bsh1236I	CGCG	1 cut(s)	644
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	2 cut(s)	91, 1122
BsiHKAI	GWGCWC	3 cut(s)	311, 551, 821
BsiSI	CCGG	4 cut(s)	57, 263, 281, 1120
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	3 cut(s)	494, 593, 709
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	311, 551, 821
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
BspACI	CCGC	6 cut(s)	41, 65, 443, 642, 644, 988
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	772, 1066
BspFNI	CGCG	1 cut(s)	644
BspHI	TCATGA	2 cut(s)	208, 862
BspLI	GGNNCC	2 cut(s)	93, 1124
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	704
BspPI	GGATC	2 cut(s)	118, 683
BspT107I	GGYRCC	2 cut(s)	91, 1122
BspTNI	GGTCTC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	4 cut(s)	295, 514, 826, 1141
BssECI	CCNNGG	3 cut(s)	48, 194, 642
BssMI	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
BssNAI	GTATAC	1 cut(s)	157
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	49, 1002
Bst4CI	ACNGT	2 cut(s)	494, 571
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	4 cut(s)	350, 436, 780, 1074
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	91, 925
BstFNI	CGCG	1 cut(s)	644
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	8 cut(s)	27, 126, 401, 678, 691, 843, 997, 1080
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 53, 306, 650, 825, 1131
BstNI	CCWGG	2 cut(s)	49, 1002
BstNSI	RCATGY	1 cut(s)	1102
BstSCI	CCNGG	5 cut(s)	47, 56, 262, 279, 1000
BstSFI	CTRYAG	1 cut(s)	407
BstSLI	GKGCMC	2 cut(s)	311, 821
BstUI	CGCG	1 cut(s)	644
BstV1I	GCAGC	3 cut(s)	25, 421, 625
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BstZ17I	GTATAC	1 cut(s)	157
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	2 cut(s)	91, 925
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	6 cut(s)	9, 147, 288, 499, 507, 819
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	1 cut(s)	16
CciI	TCATGA	2 cut(s)	208, 862
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	1138
Cfr42I	CCGCGG	1 cut(s)	645
CseI	GACGC	2 cut(s)	842, 1091
CsiI	ACCWGGT	1 cut(s)	1000
Csp6I	GTAC	7 cut(s)	113, 372, 452, 884, 979, 1018, 1096
CviAII	CATG	8 cut(s)	107, 209, 272, 735, 863, 1021, 1099, 1135
CviQI	GTAC	7 cut(s)	113, 372, 452, 884, 979, 1018, 1096
DdeI	CTNAG	4 cut(s)	350, 436, 780, 1074
DpnI	GATC	8 cut(s)	26, 125, 400, 677, 690, 842, 996, 1079
DpnII	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	1138
Eco57I	CTGAAG	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	2 cut(s)	47, 1000
FaeI	CATG	8 cut(s)	110, 212, 275, 738, 866, 1024, 1102, 1138
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	8 cut(s)	106, 208, 271, 734, 862, 1020, 1098, 1134
FauI	CCCGC	1 cut(s)	995
FbaI	TGATCA	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	39, 65, 410, 639, 642
FokI	GGATG	2 cut(s)	98, 912
Fsp4HI	GCNGC	5 cut(s)	39, 65, 410, 639, 642
FspBI	CTAG	1 cut(s)	1106
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	5 cut(s)	39, 65, 410, 639, 642
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	4 cut(s)	57, 263, 281, 1120
HgaI	GACGC	2 cut(s)	842, 1091
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	8 cut(s)	110, 212, 275, 738, 866, 1024, 1102, 1138
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	3 cut(s)	533, 952, 1116
HpaII	CCGG	4 cut(s)	57, 263, 281, 1120
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	5 cut(s)	157, 309, 344, 819, 1042
Hpy188I	TCNGA	5 cut(s)	198, 325, 617, 693, 1075
Hpy188III	TCNNGA	6 cut(s)	209, 219, 418, 741, 863, 940
Hpy8I	GTNNAC	5 cut(s)	157, 309, 344, 819, 1042
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	2 cut(s)	494, 571
HpyCH4V	TGCA	9 cut(s)	33, 300, 309, 409, 566, 581, 653, 819, 1134
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 53, 306, 650, 825, 1131
HpyF3I	CTNAG	4 cut(s)	350, 436, 780, 1074
Hsp92II	CATG	8 cut(s)	110, 212, 275, 738, 866, 1024, 1102, 1138
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	24
KspI	CCGCGG	1 cut(s)	645
Kzo9I	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
LmnI	GCTCC	1 cut(s)	825
Lsp1109I	GCAGC	3 cut(s)	25, 421, 625
LweI	GCATC	1 cut(s)	837
MabI	ACCWGGT	1 cut(s)	1000
MaeI	CTAG	1 cut(s)	1106
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	8 cut(s)	26, 125, 400, 677, 690, 842, 996, 1079
MboI	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	3 cut(s)	311, 551, 821
MluCI	AATT	3 cut(s)	222, 914, 1046
MlyI	GAGTC	1 cut(s)	946
MmeI	TCCRAC	2 cut(s)	723, 871
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	4 cut(s)	132, 357, 483, 767
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	67, 644
MspI	CCGG	4 cut(s)	57, 263, 281, 1120
MspR9I	CCNGG	5 cut(s)	49, 58, 264, 281, 1002
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	49, 1002
MvnI	CGCG	1 cut(s)	644
MwoI	GCNNNNNNNGC	6 cut(s)	44, 53, 306, 650, 825, 1131
NciI	CCSGG	3 cut(s)	58, 264, 281
NdeII	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
NlaIII	CATG	8 cut(s)	110, 212, 275, 738, 866, 1024, 1102, 1138
NlaIV	GGNNCC	2 cut(s)	93, 1124
NspI	RCATGY	1 cut(s)	1102
PagI	TCATGA	2 cut(s)	208, 862
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	2 cut(s)	533, 1116
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	5 cut(s)	40, 66, 411, 640, 643
PleI	GAGTC	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	946
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	2 cut(s)	47, 1000
PspGI	CCWGG	2 cut(s)	47, 1000
PspN4I	GGNNCC	2 cut(s)	93, 1124
PspPI	GGNCC	1 cut(s)	1138
PstI	CTGCAG	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	123
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	7 cut(s)	114, 373, 453, 885, 980, 1019, 1097
RsaNI	GTAC	7 cut(s)	113, 372, 452, 884, 979, 1018, 1096
RseI	CAYNNNNRTG	1 cut(s)	150
SacII	CCGCGG	1 cut(s)	645
SaqAI	TTAA	4 cut(s)	132, 357, 483, 767
SatI	GCNGC	5 cut(s)	39, 65, 410, 639, 642
Sau3AI	GATC	8 cut(s)	24, 123, 398, 675, 688, 840, 994, 1077
Sau96I	GGNCC	1 cut(s)	1138
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	5 cut(s)	49, 58, 264, 281, 1002
SduI	GDGCHC	3 cut(s)	311, 551, 821
SexAI	ACCWGGT	1 cut(s)	1000
SfaNI	GCATC	1 cut(s)	837
SfcI	CTRYAG	1 cut(s)	407
Sfr303I	CCGCGG	1 cut(s)	645
SgrBI	CCGCGG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	1138
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	3 cut(s)	222, 914, 1046
SsiI	CCGC	6 cut(s)	41, 65, 443, 642, 644, 988
SspMI	CTAG	1 cut(s)	1106
StyD4I	CCNGG	5 cut(s)	47, 56, 262, 279, 1000
TaaI	ACNGT	2 cut(s)	494, 571
TaqI	TCGA	1 cut(s)	831
TasI	AATT	3 cut(s)	222, 914, 1046
TatI	WGTACW	5 cut(s)	451, 883, 978, 1017, 1095
TauI	GCSGC	2 cut(s)	67, 644
TfiI	GAWTC	2 cut(s)	533, 1116
Tru1I	TTAA	4 cut(s)	132, 357, 483, 767
Tru9I	TTAA	4 cut(s)	132, 357, 483, 767
TscAI	CASTG	6 cut(s)	16, 154, 295, 499, 514, 826
TseI	GCWGC	3 cut(s)	38, 409, 638
TspDTI	ATGAA	8 cut(s)	123, 225, 546, 746, 851, 927, 947, 1037
TspRI	CASTG	6 cut(s)	16, 154, 295, 499, 514, 826
Tth111I	GACNNNGTC	1 cut(s)	272
VneI	GTGCAC	2 cut(s)	307, 817
VpaK11BI	GGWCC	1 cut(s)	1138
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	2 cut(s)	914, 1046
XceI	RCATGY	1 cut(s)	1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	1 cut(s)	1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.