Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000493.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

353920 .. 359701

Gene Structure 5782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgcagaagacgaaggtgcgcgagacagtgaaggtgaacgtattgtgctgtgtcaaagaggcggcgctgtgctgggctgcatcgccatcgccatcgccttcactgacaagctctctctctgcaaagcataaacattttcagcaaagcaaactcaaacaagtgtccttctcttcaagatttaggattgattcgcccaaatggcctcctttatcttcctcatcatccgcttcgaaccggggcgactcctcacctgaggacgttgccgttttgtcctccactagggcttttgcgcaggatgcctaccaaagtcttgaagctgctttcagtgctttgtcctcaatcatttgtgtactcttcagtttgatggaggaagagaaagtagaagaaatacctgaaataacccatagagtatacctggatattgatattgaggaacaacgcttagggcgagatcatcaggatgccttaggactcactgtcgttacaggactcaccatcatcagacgcggaggtgagcaccaccggtgccaccagcaagctcaacgaggtcgacatctagtccgtgccgtaattctccgatttgttcgatggaggaggaggaagcacttgtcagggaggccatggcagcgggaagctaacaagcgtagcaacaattggctaccaccttcttgggctattcttgccttggttgtcctcggatttaatgaattcagaaatcatgacagtcttaagggttctccttccgccgctcgccatcgtcatcgcctctcttcagtctgggttcaaatttcaaaacgccgaagtcgccgtcgccatcgccacgctatcaccatcgcctatcttcagtctgggttcaaatttcaaaacgacgaagtcaccatcgccattgtcctctctggctctctccctctccaggctccagcacgtttgctctcttcgactcttcggtctcttcctgaagccgtcaagcaacaaagtagattctgggttcgactcttcaagctcggtgagtcgctgattcttcaaggcttaagctcggaagaatttgcggatcttagagccaagggtggcgagcttctgggtatggttttctcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005886 GO:0006810 GO:0006888 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009832 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0017076 GO:0019001 GO:0022622 GO:0030029 GO:0030036 GO:0030154 GO:0031090 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032989 GO:0035639 GO:0036094 GO:0040007 GO:0042546 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060560 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0099402 GO:1901265 GO:1901363 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RHD3

Protein Analysis

366

Amino Acids

41.38

Weight (kDa)

10.51

Isoelectric Point (pI)

72.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	946
Acc16I	TGCGCA	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	749
AccI	GTMKAC	2 cut(s)	411, 550
AccII	CGCG	2 cut(s)	21, 507
AciI	CCGC	7 cut(s)	62, 225, 507, 628, 744, 747, 1049
AclWI	GGATC	1 cut(s)	1059
AcsI	RAATTY	4 cut(s)	707, 786, 857, 1043
AcuI	CTGAAG	4 cut(s)	340, 756, 827, 978
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	279, 913
AflII	CTTAAG	2 cut(s)	728, 1030
AgeI	ACCGGT	1 cut(s)	522
AgsI	TTSAA	8 cut(s)	174, 314, 785, 792, 856, 863, 1000, 1025
AhdI	GACNNNNNGTC	2 cut(s)	476, 557
AjnI	CCWGG	2 cut(s)	414, 912
AluBI	AGCT	7 cut(s)	111, 317, 539, 635, 1003, 1035, 1075
AluI	AGCT	7 cut(s)	111, 317, 539, 635, 1003, 1035, 1075
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	2 cut(s)	17, 954
AlwI	GGATC	1 cut(s)	1059
AoxI	GGCC	2 cut(s)	200, 617
ApeKI	GCWGC	3 cut(s)	77, 317, 625
ApoI	RAATTY	4 cut(s)	707, 786, 857, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
AsiGI	ACCGGT	1 cut(s)	522
AspLEI	GCGC	3 cut(s)	21, 67, 292
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	7 cut(s)	46, 240, 484, 524, 820, 868, 1019
AsuII	TTCGAA	1 cut(s)	230
AxyI	CCTNAGG	2 cut(s)	252, 466
BanI	GGYRCC	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	3 cut(s)	64, 304, 637
BccI	CCATC	9 cut(s)	94, 100, 358, 503, 582, 762, 822, 839, 887
BceAI	ACGGC	4 cut(s)	248, 551, 792, 947
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	2 cut(s)	416, 914
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	17, 954
BfaI	CTAG	2 cut(s)	279, 557
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	2 cut(s)	728, 1030
BglI	GCCNNNNNGGC	1 cut(s)	199
BisI	GCNGC	5 cut(s)	63, 78, 318, 626, 747
BlsI	GCNGC	5 cut(s)	64, 79, 319, 627, 748
Bme1390I	CCNGG	3 cut(s)	236, 416, 914
BmeRI	GACNNNNNGTC	2 cut(s)	476, 557
BmiI	GGNNCC	2 cut(s)	527, 918
BmrFI	CCNGG	3 cut(s)	236, 416, 914
BmsI	GCATC	3 cut(s)	89, 286, 451
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	2 cut(s)	896, 903
Bpu10I	CCTNAGC	1 cut(s)	442
Bpu14I	TTCGAA	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	954
BsaJI	CCNNGG	5 cut(s)	235, 620, 684, 694, 1062
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 913
Bse118I	RCCGGY	1 cut(s)	522
Bse21I	CCTNAGG	2 cut(s)	252, 466
BseBI	CCWGG	2 cut(s)	416, 914
BseDI	CCNNGG	5 cut(s)	235, 620, 684, 694, 1062
BseGI	GGATG	3 cut(s)	221, 301, 466
BseLI	CCNNNNNNNGG	2 cut(s)	279, 913
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	235, 607, 610
BseXI	GCAGC	3 cut(s)	64, 304, 637
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	2 cut(s)	21, 507
BshFI	GGCC	2 cut(s)	202, 619
BshNI	GGYRCC	1 cut(s)	525
BshTI	ACCGGT	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	235, 523
BslI	CCNNNNNNNGG	2 cut(s)	279, 913
BsmAI	GTCTC	2 cut(s)	17, 954
BsnI	GGCC	2 cut(s)	202, 619
Bso31I	GGTCTC	1 cut(s)	954
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	451, 1051
Bsp19I	CCATGG	1 cut(s)	620
BspACI	CCGC	7 cut(s)	62, 225, 507, 628, 744, 747, 1049
BspANI	GGCC	2 cut(s)	202, 619
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	21, 507
BspHI	TCATGA	1 cut(s)	718
BspLI	GGNNCC	2 cut(s)	527, 918
BspPI	GGATC	1 cut(s)	1059
BspT104I	TTCGAA	1 cut(s)	230
BspT107I	GGYRCC	1 cut(s)	525
BspTI	CTTAAG	2 cut(s)	728, 1030
BspTNI	GGTCTC	1 cut(s)	954
BsrBI	CCGCTC	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	522
BssECI	CCNNGG	5 cut(s)	235, 620, 684, 694, 1062
BssMI	GATC	2 cut(s)	451, 1051
BssNAI	GTATAC	1 cut(s)	412
BssT1I	CCWWGG	3 cut(s)	620, 684, 1062
Bst1107I	GTATAC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	416, 914
Bst4CI	ACNGT	3 cut(s)	28, 478, 725
Bst6I	CTCTTC	8 cut(s)	175, 359, 366, 775, 940, 948, 957, 1001
BstAFI	CTTAAG	2 cut(s)	728, 1030
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	537, 751, 1073
BstDEI	CTNAG	4 cut(s)	252, 442, 466, 1055
BstDSI	CCRYGG	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	221, 301, 466
BstFNI	CGCG	2 cut(s)	21, 507
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	3 cut(s)	21, 67, 292
BstKTI	GATC	2 cut(s)	454, 1054
BstMAI	GTCTC	2 cut(s)	17, 954
BstMBI	GATC	2 cut(s)	451, 1051
BstMWI	GCNNNNNNNGC	6 cut(s)	199, 296, 326, 625, 680, 804
BstNI	CCWGG	2 cut(s)	416, 914
BstSCI	CCNGG	3 cut(s)	234, 414, 912
BstUI	CGCG	2 cut(s)	21, 507
BstV1I	GCAGC	3 cut(s)	64, 304, 637
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	1051
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	1 cut(s)	1051
BstZ17I	GTATAC	1 cut(s)	412
Bsu36I	CCTNAGG	2 cut(s)	252, 466
BsuRI	GGCC	2 cut(s)	202, 619
BtgI	CCRYGG	1 cut(s)	620
BtgZI	GCGATG	7 cut(s)	66, 72, 78, 746, 800, 817, 865
BtsCI	GGATG	3 cut(s)	221, 301, 466
BtsIMutI	CAGTG	4 cut(s)	33, 101, 331, 474
Cac8I	GCNNGC	3 cut(s)	537, 751, 1073
CciI	TCATGA	1 cut(s)	718
CfoI	GCGC	3 cut(s)	21, 67, 292
Cfr10I	RCCGGY	1 cut(s)	522
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	350
CspAI	ACCGGT	1 cut(s)	522
CviAII	CATG	2 cut(s)	621, 719
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	4 cut(s)	252, 442, 466, 1055
DpnI	GATC	2 cut(s)	453, 1053
DpnII	GATC	2 cut(s)	451, 1051
DrdI	GACNNNNNNGTC	1 cut(s)	946
DriI	GACNNNNNGTC	2 cut(s)	476, 557
DseDI	GACNNNNNNGTC	1 cut(s)	946
Eam1104I	CTCTTC	8 cut(s)	175, 359, 366, 775, 940, 948, 957, 1001
Eam1105I	GACNNNNNGTC	2 cut(s)	476, 557
EarI	CTCTTC	8 cut(s)	175, 359, 366, 775, 940, 948, 957, 1001
EciI	GGCGGA	1 cut(s)	733
Eco130I	CCWWGG	3 cut(s)	620, 684, 1062
Eco31I	GGTCTC	1 cut(s)	954
Eco57I	CTGAAG	4 cut(s)	340, 756, 827, 978
Eco81I	CCTNAGG	2 cut(s)	252, 466
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	414, 912
EcoT14I	CCWWGG	3 cut(s)	620, 684, 1062
ErhI	CCWWGG	3 cut(s)	620, 684, 1062
FaeI	CATG	2 cut(s)	624, 722
FaiI	YATR	6 cut(s)	129, 405, 412, 622, 720, 1085
FatI	CATG	2 cut(s)	620, 718
FauI	CCCGC	1 cut(s)	621
FblI	GTMKAC	2 cut(s)	411, 550
Fnu4HI	GCNGC	5 cut(s)	63, 78, 318, 626, 747
FokI	GGATG	3 cut(s)	208, 308, 473
Fsp4HI	GCNGC	5 cut(s)	63, 78, 318, 626, 747
FspBI	CTAG	2 cut(s)	279, 557
FspI	TGCGCA	1 cut(s)	291
GlaI	GCGC	3 cut(s)	20, 66, 291
GluI	GCNGC	5 cut(s)	63, 78, 318, 626, 747
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	2 cut(s)	896, 903
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	202, 619
HapII	CCGG	2 cut(s)	235, 523
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	3 cut(s)	21, 67, 292
Hin1II	CATG	2 cut(s)	624, 722
Hin6I	GCGC	3 cut(s)	19, 65, 290
HinP1I	GCGC	3 cut(s)	19, 65, 290
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	9 cut(s)	188, 242, 471, 489, 940, 981, 993, 1010, 1018
HpaII	CCGG	2 cut(s)	235, 523
HphI	GGTGA	7 cut(s)	46, 240, 484, 524, 820, 868, 1019
Hpy166II	GTNNAC	4 cut(s)	37, 350, 412, 551
Hpy188I	TCNGA	5 cut(s)	503, 578, 698, 713, 1039
Hpy188III	TCNNGA	5 cut(s)	174, 311, 458, 719, 956
Hpy8I	GTNNAC	4 cut(s)	37, 350, 412, 551
Hpy99I	CGWCG	2 cut(s)	813, 872
HpyAV	CCTTC	6 cut(s)	7, 25, 108, 175, 675, 750
HpyCH4III	ACNGT	3 cut(s)	28, 478, 725
HpyCH4IV	ACGT	3 cut(s)	39, 258, 925
HpyCH4V	TGCA	3 cut(s)	4, 80, 122
HpyF10VI	GCNNNNNNNGC	6 cut(s)	199, 296, 326, 625, 680, 804
HpyF3I	CTNAG	4 cut(s)	252, 442, 466, 1055
HpySE526I	ACGT	3 cut(s)	39, 258, 925
Hsp92II	CATG	2 cut(s)	624, 722
HspAI	GCGC	3 cut(s)	19, 65, 290
Kzo9I	GATC	2 cut(s)	451, 1051
LmnI	GCTCC	1 cut(s)	922
Lsp1109I	GCAGC	3 cut(s)	64, 304, 637
LweI	GCATC	3 cut(s)	89, 286, 451
MaeI	CTAG	2 cut(s)	279, 557
MaeII	ACGT	3 cut(s)	39, 258, 925
MaeIII	GTNAC	2 cut(s)	481, 874
MalI	GATC	2 cut(s)	453, 1053
MbiI	CCGCTC	1 cut(s)	749
MboI	GATC	2 cut(s)	451, 1051
MfeI	CAATTG	1 cut(s)	652
MflI	RGATCY	1 cut(s)	1051
MhlI	GDGCHC	1 cut(s)	519
MluCI	AATT	7 cut(s)	570, 652, 707, 786, 857, 1043, 1095
MlyI	GAGTC	6 cut(s)	236, 465, 483, 934, 987, 1019
MseI	TTAA	3 cut(s)	702, 729, 1031
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	628
MspCI	CTTAAG	2 cut(s)	728, 1030
MspI	CCGG	2 cut(s)	235, 523
MspR9I	CCNGG	3 cut(s)	236, 416, 914
MunI	CAATTG	1 cut(s)	652
MvaI	CCWGG	2 cut(s)	416, 914
MvnI	CGCG	2 cut(s)	21, 507
MwoI	GCNNNNNNNGC	6 cut(s)	199, 296, 326, 625, 680, 804
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	620
NdeII	GATC	2 cut(s)	451, 1051
NlaIII	CATG	2 cut(s)	624, 722
NlaIV	GGNNCC	2 cut(s)	527, 918
NmuCI	GTSAC	1 cut(s)	874
NsbI	TGCGCA	1 cut(s)	291
NspV	TTCGAA	1 cut(s)	230
PagI	TCATGA	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	445
PfeI	GAWTC	3 cut(s)	188, 981, 1018
PflFI	GACNNNGTC	1 cut(s)	872
PinAI	ACCGGT	1 cut(s)	522
PkrI	GCNGC	5 cut(s)	64, 79, 319, 627, 748
PleI	GAGTC	6 cut(s)	236, 465, 483, 934, 987, 1018
PpsI	GAGTC	6 cut(s)	236, 465, 483, 934, 987, 1018
Psp6I	CCWGG	2 cut(s)	414, 912
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	2 cut(s)	414, 912
PspN4I	GGNNCC	2 cut(s)	527, 918
PsuI	RGATCY	1 cut(s)	1051
PsyI	GACNNNGTC	1 cut(s)	872
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	702, 729, 1031
SatI	GCNGC	5 cut(s)	63, 78, 318, 626, 747
Sau3AI	GATC	2 cut(s)	451, 1051
SchI	GAGTC	6 cut(s)	236, 465, 483, 934, 987, 1019
ScrFI	CCNGG	3 cut(s)	236, 416, 914
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	3 cut(s)	89, 286, 451
SfuI	TTCGAA	1 cut(s)	230
SgrAI	CRCCGGYG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	728, 1030
SmoI	CTYRAG	2 cut(s)	728, 1030
Sse9I	AATT	7 cut(s)	570, 652, 707, 786, 857, 1043, 1095
SsiI	CCGC	7 cut(s)	62, 225, 507, 628, 744, 747, 1049
SspMI	CTAG	2 cut(s)	279, 557
StyD4I	CCNGG	3 cut(s)	234, 414, 912
StyI	CCWWGG	3 cut(s)	620, 684, 1062
TaaI	ACNGT	3 cut(s)	28, 478, 725
TaiI	ACGT	3 cut(s)	42, 261, 928
TaqI	TCGA	5 cut(s)	230, 550, 586, 938, 991
TaqII	GACCGA	1 cut(s)	936
TasI	AATT	7 cut(s)	570, 652, 707, 786, 857, 1043, 1095
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	2 cut(s)	65, 749
TfiI	GAWTC	3 cut(s)	188, 981, 1018
Tru1I	TTAA	3 cut(s)	702, 729, 1031
Tru9I	TTAA	3 cut(s)	702, 729, 1031
TscAI	CASTG	4 cut(s)	33, 108, 331, 481
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	3 cut(s)	77, 317, 625
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	1 cut(s)	720
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	4 cut(s)	33, 108, 331, 481
Tth111I	GACNNNGTC	1 cut(s)	872
Vha464I	CTTAAG	2 cut(s)	728, 1030
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	4 cut(s)	707, 786, 857, 1043
XmiI	GTMKAC	2 cut(s)	411, 550
XspI	CTAG	2 cut(s)	279, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.