Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000494.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

8813 .. 9975

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaggatagtgggactgacgtgtgggatttcaactgggaagagtactgtcgcaaatctcttcaaggcccatgacattcctgttgttgacgctgatcttgtggctcatgtaagtgatgagcaaaagctgatacatactaattttgacaattatggaaaatatgcgaatcagttctctttagctctttcacagactgagcatctttggtttcaggatatattgaagaagggaactggtggatggaaaaagaagttgactaaactaggacaaatcgtattctctaatcccgaaaagtgtcaacttttgaaccggggtttaaggttatttgttcttgatgtccctctattgttcgaggccaagatggacagatggaccaagcccatagcggagcatgtgaacttagtgcacaaccttgatgaccctgttaccttccctttcaaatggtcctggcgtgacgtgtcaatcaaggtccaaaacatgcgccaccagtacctgggagtcaagcagaagatccgcgtctctaaggacgagttcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004140 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0015936 GO:0015937 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

CoaE

Protein Analysis

179

Amino Acids

20.6

Weight (kDa)

9.44

Isoelectric Point (pI)

16.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CoaE	PF01121	3 - 104	2.6e-12	Dephospho-CoA kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccII	CGCG	1 cut(s)	516
AciI	CCGC	2 cut(s)	386, 514
AclWI	GGATC	1 cut(s)	505
AfaI	GTAC	2 cut(s)	46, 491
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflIII	ACRYGT	2 cut(s)	20, 456
AgsI	TTSAA	6 cut(s)	33, 64, 223, 307, 439, 535
AjiI	CACGTC	2 cut(s)	21, 457
AjnI	CCWGG	2 cut(s)	446, 492
AluBI	AGCT	2 cut(s)	127, 182
AluI	AGCT	2 cut(s)	127, 182
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	2 cut(s)	66, 354
ApaLI	GTGCAC	1 cut(s)	404
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	4 cut(s)	67, 372, 444, 469
AsuC2I	CCSGG	1 cut(s)	311
AvaII	GGWCC	3 cut(s)	372, 444, 469
BaeGI	GKGCMC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	3 cut(s)	234, 355, 363
BciT130I	CCWGG	2 cut(s)	448, 494
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	263
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	3 cut(s)	311, 448, 494
Bme18I	GGWCC	3 cut(s)	372, 444, 469
BmgBI	CACGTC	2 cut(s)	21, 457
BmgT120I	GGNCC	4 cut(s)	67, 372, 444, 469
BmrFI	CCNGG	3 cut(s)	311, 448, 494
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	310, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse1I	ACTGG	3 cut(s)	40, 238, 487
BseBI	CCWGG	2 cut(s)	448, 494
BseDI	CCNNGG	2 cut(s)	310, 493
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	3 cut(s)	40, 238, 487
BseSI	GKGCMC	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	516
BshFI	GGCC	2 cut(s)	68, 356
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	1 cut(s)	310
BslFI	GGGAC	2 cut(s)	27, 323
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	1 cut(s)	523
BsmBI	CGTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	27, 323
BsnI	GGCC	2 cut(s)	68, 356
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	94, 510
BspACI	CCGC	2 cut(s)	386, 514
BspANI	GGCC	2 cut(s)	68, 356
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	516
BspPI	GGATC	1 cut(s)	505
BsrI	ACTGG	3 cut(s)	40, 238, 487
BssECI	CCNNGG	2 cut(s)	310, 493
BssMI	GATC	2 cut(s)	94, 510
Bst2UI	CCWGG	2 cut(s)	448, 494
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	2 cut(s)	35, 65
BstDEI	CTNAG	3 cut(s)	195, 400, 522
BstF5I	GGATG	1 cut(s)	245
BstFNI	CGCG	1 cut(s)	516
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	2 cut(s)	97, 513
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	2 cut(s)	94, 510
BstNI	CCWGG	2 cut(s)	448, 494
BstNSI	RCATGY	2 cut(s)	395, 481
BstSCI	CCNGG	3 cut(s)	309, 446, 492
BstSLI	GKGCMC	1 cut(s)	408
BstUI	CGCG	1 cut(s)	516
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	68, 356
BtrI	CACGTC	2 cut(s)	21, 457
BtsCI	GGATG	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	4 cut(s)	67, 372, 444, 469
CseI	GACGC	2 cut(s)	98, 505
Csp6I	GTAC	2 cut(s)	45, 490
CviAII	CATG	4 cut(s)	71, 107, 392, 478
CviJI	RGCY	6 cut(s)	68, 104, 127, 182, 356, 379
CviKI_1	RGCY	6 cut(s)	68, 104, 127, 182, 356, 379
CviQI	GTAC	2 cut(s)	45, 490
DdeI	CTNAG	3 cut(s)	195, 400, 522
DpnI	GATC	2 cut(s)	96, 512
DpnII	GATC	2 cut(s)	94, 510
Eam1104I	CTCTTC	2 cut(s)	35, 65
EarI	CTCTTC	2 cut(s)	35, 65
Eco47I	GGWCC	3 cut(s)	372, 444, 469
EcoRII	CCWGG	2 cut(s)	446, 492
Esp3I	CGTCTC	1 cut(s)	523
FaeI	CATG	4 cut(s)	74, 110, 395, 481
FaiI	YATR	9 cut(s)	72, 108, 135, 153, 162, 218, 383, 393, 479
FaqI	GGGAC	2 cut(s)	27, 323
FatI	CATG	4 cut(s)	70, 106, 391, 477
FokI	GGATG	1 cut(s)	252
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	68, 356
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	2 cut(s)	98, 505
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	74, 110, 395, 481
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	3 cut(s)	88, 255, 299
HindII	GTYRAC	3 cut(s)	88, 255, 299
HinfI	GANTC	2 cut(s)	166, 498
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	5 cut(s)	88, 255, 299, 397, 406
Hpy188III	TCNNGA	3 cut(s)	212, 287, 332
Hpy8I	GTNNAC	5 cut(s)	88, 255, 299, 397, 406
HpyAV	CCTTC	2 cut(s)	220, 439
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	20, 456
HpyCH4V	TGCA	1 cut(s)	406
HpyF3I	CTNAG	3 cut(s)	195, 400, 522
HpySE526I	ACGT	2 cut(s)	20, 456
Hsp92II	CATG	4 cut(s)	74, 110, 395, 481
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	94, 510
LmnI	GCTCC	1 cut(s)	388
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	2 cut(s)	20, 456
MaeIII	GTNAC	2 cut(s)	424, 452
MalI	GATC	2 cut(s)	96, 512
MboI	GATC	2 cut(s)	94, 510
MboII	GAAGA	4 cut(s)	52, 52, 235, 520
MflI	RGATCY	1 cut(s)	510
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	2 cut(s)	139, 148
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	2 cut(s)	346, 351
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	3 cut(s)	311, 448, 494
MvaI	CCWGG	2 cut(s)	448, 494
MvnI	CGCG	1 cut(s)	516
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	94, 510
NlaIII	CATG	4 cut(s)	74, 110, 395, 481
NmuCI	GTSAC	1 cut(s)	452
NspI	RCATGY	2 cut(s)	395, 481
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	493
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	446, 492
PspGI	CCWGG	2 cut(s)	446, 492
PspPI	GGNCC	4 cut(s)	67, 372, 444, 469
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	510
RsaI	GTAC	2 cut(s)	46, 491
RsaNI	GTAC	2 cut(s)	45, 490
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	317
Sau3AI	GATC	2 cut(s)	94, 510
Sau96I	GGNCC	4 cut(s)	67, 372, 444, 469
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	3 cut(s)	311, 448, 494
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	9 cut(s)	23, 129, 184, 323, 414, 431, 459, 471, 495
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	3 cut(s)	372, 444, 469
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	139, 148
SsiI	CCGC	2 cut(s)	386, 514
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	309, 446, 492
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	23, 459
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	139, 148
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	404
VpaK11BI	GGWCC	3 cut(s)	372, 444, 469
XceI	RCATGY	2 cut(s)	395, 481
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.