Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000496.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

26308 .. 26583

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgttgaataagtcgtcggcaaagtggaatattataatgatcgggtaccatacgataagaagcactgccctacatggtgattcaaaggagcttgttgagcaacttctgccaattcttgaggccaatgatgtgcacttgtacatgaacgggcattgtcattgcctacaacacatcagggacgatatcaaattaaagctgatcaatccagtttctgactggcagaggaggggtcgcatgcatggagaggagacccgaaggagaataatgagaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0006793 GO:0006796 GO:0006873 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009986 GO:0009987 GO:0010035 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019725 GO:0030002 GO:0030320 GO:0030643 GO:0042221 GO:0042493 GO:0042542 GO:0042578 GO:0042592 GO:0044237 GO:0044464 GO:0046677 GO:0048878 GO:0050801 GO:0050896 GO:0055062 GO:0055081 GO:0055082 GO:0055083 GO:0065007 GO:0065008 GO:0072501 GO:0072502 GO:0072505 GO:0072506 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

91

Amino Acids

10.7

Weight (kDa)

9.44

Isoelectric Point (pI)

72.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	47, 140
AgsI	TTSAA	2 cut(s)	7, 84
AluBI	AGCT	2 cut(s)	91, 196
AluI	AGCT	2 cut(s)	91, 196
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	242
Alw44I	GTGCAC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	242
Bse1I	ACTGG	2 cut(s)	206, 221
Bse3DI	GCAATG	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	206, 221
BseRI	GAGGAG	2 cut(s)	238, 260
BseSI	GKGCMC	1 cut(s)	135
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	39, 198
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	206, 221
BssMI	GATC	2 cut(s)	39, 198
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	236
BstKTI	GATC	2 cut(s)	42, 201
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	39, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 106
BstNSI	RCATGY	1 cut(s)	238
BstSLI	GKGCMC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	236
CaiI	CAGNNNCTG	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	46, 139
CviAII	CATG	4 cut(s)	74, 142, 235, 239
CviJI	RGCY	3 cut(s)	91, 122, 196
CviKI_1	RGCY	3 cut(s)	91, 122, 196
CviQI	GTAC	2 cut(s)	46, 139
DpnI	GATC	2 cut(s)	41, 200
DpnII	GATC	2 cut(s)	39, 198
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	184
EcoRV	GATATC	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	240
FaeI	CATG	4 cut(s)	77, 145, 238, 242
FaiI	YATR	6 cut(s)	35, 51, 75, 143, 236, 240
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	4 cut(s)	73, 141, 234, 238
FbaI	TGATCA	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	77, 145, 238, 242
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	133, 238
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 106
Hsp92II	CATG	4 cut(s)	77, 145, 238, 242
KpnI	GGTACC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	39, 198
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	3 cut(s)	160, 202, 219
MalI	GATC	2 cut(s)	41, 200
MboI	GATC	2 cut(s)	39, 198
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	111, 188
MnlI	CCTC	5 cut(s)	112, 216, 219, 238, 263
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	97, 106
NdeII	GATC	2 cut(s)	39, 198
NlaIII	CATG	4 cut(s)	77, 145, 238, 242
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	240
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	2 cut(s)	47, 140
RsaNI	GTAC	2 cut(s)	46, 139
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	2 cut(s)	39, 198
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	3 cut(s)	93, 198, 274
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	2 cut(s)	111, 188
SspI	AATATT	1 cut(s)	31
TasI	AATT	2 cut(s)	111, 188
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.