Rmu_sc0000501.1_g000021

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000501.1
N/A
Physical Location & Seq
Forward (+)
71506 .. 72191
686 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
atgaccaatggcgatgacatttttgcgccgacactaactgcggagtaccttcagttgaagacatccaaagaactgtgggataaccttaagggacgttttgggaatattcatgacactttactcccagaactgaccgatcagtggaatgaaatcctcttacttaactacaaaaggttaaatgacttcaacaaagacatgttgcgcctcaaggcacgtctcaatttatgtggaagggaactcacagaaaatgatatgatcgaaaagactctttccacatttcctacttcagcacgtatcctagcgaatcagtataggctggagtatgacaacaaaagaatcactaccttcaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

117

Amino Acids

13.8

Weight (kDa)

5.83

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 35, 270
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 141
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 58, 187, 349
AjiI CACGTC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 221
AspLEI GCGC 2 cut(s) 28, 204
BbsI GAAGAC 1 cut(s) 65
BciVI GTATCC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 136, 255
BspACI CCGC 1 cut(s) 41
BspHI TCATGA 1 cut(s) 109
BspTI CTTAAG 1 cut(s) 86
BssMI GATC 2 cut(s) 136, 255
Bst4CI ACNGT 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 293
BstF5I GGATG 1 cut(s) 62
BstHHI GCGC 2 cut(s) 28, 204
BstKTI GATC 2 cut(s) 139, 258
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 136, 255
BstNSI RCATGY 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 65
BsuI GTATCC 1 cut(s) 305
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 215
BtsCI GGATG 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 146
CciI TCATGA 1 cut(s) 109
CfoI GCGC 2 cut(s) 28, 204
Csp6I GTAC 1 cut(s) 46
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 2 cut(s) 110, 196
CviJI RGCY 1 cut(s) 316
CviKI_1 RGCY 1 cut(s) 316
CviQI GTAC 1 cut(s) 46
DpnI GATC 2 cut(s) 138, 257
DpnII GATC 2 cut(s) 136, 255
Eco57I CTGAAG 2 cut(s) 35, 270
Esp3I CGTCTC 1 cut(s) 221
FaeI CATG 2 cut(s) 113, 199
FaiI YATR 6 cut(s) 111, 197, 226, 254, 312, 324
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 109, 195
FokI GGATG 1 cut(s) 49
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 27, 203
GsuI CTGGAG 1 cut(s) 338
HhaI GCGC 2 cut(s) 28, 204
Hin1II CATG 2 cut(s) 113, 199
Hin6I GCGC 2 cut(s) 26, 202
HinP1I GCGC 2 cut(s) 26, 202
HinfI GANTC 3 cut(s) 265, 304, 336
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 59, 225
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 3 cut(s) 94, 214, 292
HpySE526I ACGT 3 cut(s) 94, 214, 292
Hsp92II CATG 2 cut(s) 113, 199
HspAI GCGC 2 cut(s) 26, 202
Kzo9I GATC 2 cut(s) 136, 255
LpnPI CCDG 2 cut(s) 138, 302
MaeI CTAG 1 cut(s) 299
MaeII ACGT 3 cut(s) 94, 214, 292
MalI GATC 2 cut(s) 138, 257
MboI GATC 2 cut(s) 136, 255
MboII GAAGA 1 cut(s) 70
MluCI AATT 2 cut(s) 220, 349
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 2 cut(s) 164, 215
MseI TTAA 3 cut(s) 87, 162, 176
MspCI CTTAAG 1 cut(s) 86
NdeII GATC 2 cut(s) 136, 255
NlaIII CATG 2 cut(s) 113, 199
NspI RCATGY 1 cut(s) 199
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 2 cut(s) 304, 336
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 293
PscI ACATGT 1 cut(s) 195
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 3 cut(s) 87, 162, 176
Sau3AI GATC 2 cut(s) 136, 255
SchI GAGTC 1 cut(s) 259
SetI ASST 7 cut(s) 51, 87, 97, 176, 217, 295, 347
SgeI CNNG 8 cut(s) 122, 137, 208, 220, 225, 303, 311, 329
SmlI CTYRAG 2 cut(s) 86, 206
SmoI CTYRAG 2 cut(s) 86, 206
Sse9I AATT 2 cut(s) 220, 349
SsiI CCGC 1 cut(s) 41
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 3 cut(s) 97, 217, 295
TaqI TCGA 1 cut(s) 258
TaqII GACCGA 1 cut(s) 149
TasI AATT 2 cut(s) 220, 349
TfiI GAWTC 2 cut(s) 304, 336
Tru1I TTAA 3 cut(s) 87, 162, 176
Tru9I TTAA 3 cut(s) 87, 162, 176
TscAI CASTG 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 98, 162
TspRI CASTG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 86
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.