Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000502.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

69117 .. 72857

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atggccagtcgtgaagagaattctgcacatcatgaggtaagaaagccactcgtggatggtggattggatcatggaaccaaagaggatcaatggatggtgtacatgagcacattcgtcgcagtttgcggctcttatgaattcggatgctgtgtgggttattcttcgcctacgcaatcagccattagggaagatctcaatttatcattagcacagttttcaatgttcggcgccatcttgacattcggtgcaatgataggtgctatcacaattgggccgatcactgattttattggtcgaaaaggggcgttgagattttccagtgttgtctgtgttgcaggttggcttgccatttacagatttacttttccaaggttgggagctttgcttctggacattgggagaatggcaaaaggatatggaatgggagccttttcatacgtggtacctatatttgttgctgaaattgcacccaaacatcttcgaggaagtctaactgctttgaatcaggcaaagacaggaaaccaaaaagattttgaagatgcactgcagacacttcgtggcagagatgccgacatatctgaagaagcagaagaaatccaggttgtggttactggcattggtgcagccataatggataaagctggaagaaagcctctaattttgacttctgcaacagggttgttgcttggctgcgtcctgactgccatttcattctttctgaaggttcatcaactgtcagccgaggcagttccgatacttgcagtaactggcatattgtttctggtctcaggtattcataggatccttttcaataggaatgggagcagttccatgggttctgatgtcagaggcaggaagctttgcaaccctagtgaactggtttggtgcatggctgtgctcctatactttcaactttcttatgagttggagctcctacggtacctttattctgtacgcagtaatcaatgctctggccatattgttcgtgattgtgatggtacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009536 GO:0009705 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0071702 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

334

Amino Acids

36.28

Weight (kDa)

7.03

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	53 - 170	4.4e-10	Major Facilitator Superfamily
Sugar_tr	PF00083	59 - 169	2.7e-19	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	326
Acc65I	GGTACC	3 cut(s)	442, 939, 998
AccB1I	GGYRCC	4 cut(s)	227, 442, 939, 998
AccB7I	CCANNNNNTGG	1 cut(s)	604
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	4 cut(s)	75, 93, 796, 809
AcoI	YGGCCR	2 cut(s)	3, 973
AcsI	RAATTY	2 cut(s)	19, 137
AcuI	CTGAAG	2 cut(s)	600, 740
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	557
AfaI	GTAC	5 cut(s)	101, 444, 941, 954, 1000
AfiI	CCNNNNNNNGG	2 cut(s)	374, 604
AgsI	TTSAA	5 cut(s)	219, 502, 536, 811, 911
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	4 cut(s)	380, 641, 859, 931
AluI	AGCT	4 cut(s)	380, 641, 859, 931
Alw21I	GWGCWC	3 cut(s)	110, 900, 933
Alw26I	GTCTC	1 cut(s)	790
AlwI	GGATC	4 cut(s)	75, 93, 796, 809
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	3, 272, 973
ApeKI	GCWGC	2 cut(s)	623, 690
ApoI	RAATTY	2 cut(s)	19, 137
Asp718I	GGTACC	3 cut(s)	442, 939, 998
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	272
BalI	TGGCCA	2 cut(s)	5, 975
BamHI	GGATCC	1 cut(s)	801
BanI	GGYRCC	4 cut(s)	227, 442, 939, 998
BanII	GRGCYC	1 cut(s)	933
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	3 cut(s)	110, 900, 933
BbvI	GCAGC	2 cut(s)	635, 677
BccI	CCATC	4 cut(s)	50, 88, 239, 989
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 536, 570
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	1 cut(s)	790
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	3 cut(s)	127, 624, 691
BlsI	GCNGC	3 cut(s)	128, 625, 692
Bme1390I	CCNGG	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	7 cut(s)	76, 229, 427, 444, 803, 941, 1000
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	134, 529, 556
BsaAI	YACGTR	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	790
BsaJI	CCNNGG	3 cut(s)	368, 741, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 604
Bse1I	ACTGG	5 cut(s)	6, 318, 616, 772, 882
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	368, 741, 831
BseGI	GGATG	3 cut(s)	61, 99, 149
BseLI	CCNNNNNNNGG	2 cut(s)	374, 604
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	801
BseNI	ACTGG	5 cut(s)	6, 318, 616, 772, 882
BseXI	GCAGC	2 cut(s)	635, 677
BsgI	GTGCAG	2 cut(s)	9, 642
BshFI	GGCC	3 cut(s)	5, 274, 975
BshNI	GGYRCC	4 cut(s)	227, 442, 939, 998
BsiHKAI	GWGCWC	3 cut(s)	110, 900, 933
BslI	CCNNNNNNNGG	2 cut(s)	374, 604
BsmAI	GTCTC	1 cut(s)	790
BsnI	GGCC	3 cut(s)	5, 274, 975
Bso31I	GGTCTC	1 cut(s)	790
Bsp1286I	GDGCHC	3 cut(s)	110, 900, 933
Bsp1407I	TGTACA	1 cut(s)	99
Bsp143I	GATC	5 cut(s)	67, 85, 190, 276, 801
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	3 cut(s)	5, 274, 975
BspCNI	CTCAG	1 cut(s)	800
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	7 cut(s)	76, 229, 427, 444, 803, 941, 1000
BspMAI	CTGCAG	1 cut(s)	549
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	4 cut(s)	75, 93, 796, 809
BspT107I	GGYRCC	4 cut(s)	227, 442, 939, 998
BspTNI	GGTCTC	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	99
BsrI	ACTGG	5 cut(s)	6, 318, 616, 772, 882
BssECI	CCNNGG	3 cut(s)	368, 741, 831
BssMI	GATC	5 cut(s)	67, 85, 190, 276, 801
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	50
BssT1I	CCWWGG	2 cut(s)	368, 831
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	3 cut(s)	213, 735, 939
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	99
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	787
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	3 cut(s)	61, 99, 149
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	5 cut(s)	70, 88, 193, 279, 804
BstMAI	GTCTC	1 cut(s)	790
BstMBI	GATC	5 cut(s)	67, 85, 190, 276, 801
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	545
BstV1I	GCAGC	2 cut(s)	635, 677
BstX2I	RGATCY	2 cut(s)	190, 801
BstYI	RGATCY	2 cut(s)	190, 801
BsuRI	GGCC	3 cut(s)	5, 274, 975
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	3 cut(s)	61, 99, 149
BtsI	GCAGTG	1 cut(s)	542
BtsIMutI	CAGTG	3 cut(s)	279, 325, 542
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	682
Csp6I	GTAC	5 cut(s)	100, 443, 940, 953, 999
CviAII	CATG	5 cut(s)	32, 71, 103, 832, 889
CviQI	GTAC	5 cut(s)	100, 443, 940, 953, 999
DdeI	CTNAG	1 cut(s)	787
DinI	GGCGCC	1 cut(s)	229
DpnI	GATC	5 cut(s)	69, 87, 192, 278, 803
DpnII	GATC	5 cut(s)	67, 85, 190, 276, 801
DraIII	CACNNNGTG	1 cut(s)	557
EaeI	YGGCCR	2 cut(s)	3, 973
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	931
Eco130I	CCWWGG	2 cut(s)	368, 831
Eco24I	GRGCYC	1 cut(s)	933
Eco31I	GGTCTC	1 cut(s)	790
Eco53kI	GAGCTC	1 cut(s)	931
Eco57I	CTGAAG	2 cut(s)	600, 740
EcoICRI	GAGCTC	1 cut(s)	931
EcoRI	GAATTC	2 cut(s)	19, 137
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	2 cut(s)	368, 831
EcoT38I	GRGCYC	1 cut(s)	933
EgeI	GGCGCC	1 cut(s)	229
EheI	GGCGCC	1 cut(s)	229
ErhI	CCWWGG	2 cut(s)	368, 831
FaeI	CATG	5 cut(s)	35, 74, 106, 835, 892
FatI	CATG	5 cut(s)	31, 70, 102, 831, 888
Fnu4HI	GCNGC	3 cut(s)	127, 624, 691
FokI	GGATG	3 cut(s)	68, 106, 156
FriOI	GRGCYC	1 cut(s)	933
Fsp4HI	GCNGC	3 cut(s)	127, 624, 691
FspBI	CTAG	1 cut(s)	870
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	127, 624, 691
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	3 cut(s)	5, 274, 975
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	35, 74, 106, 835, 892
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	100, 875
Hpy188I	TCNGA	6 cut(s)	143, 580, 720, 753, 841, 848
Hpy188III	TCNNGA	6 cut(s)	11, 32, 235, 389, 697, 986
Hpy8I	GTNNAC	2 cut(s)	100, 875
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	3 cut(s)	213, 735, 939
HpyCH4IV	ACGT	1 cut(s)	438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	787
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	35, 74, 106, 835, 892
HspAI	GCGC	1 cut(s)	228
KasI	GGCGCC	1 cut(s)	227
KpnI	GGTACC	3 cut(s)	446, 943, 1002
Kzo9I	GATC	5 cut(s)	67, 85, 190, 276, 801
LmnI	GCTCC	6 cut(s)	377, 425, 822, 903, 928, 936
Lsp1109I	GCAGC	2 cut(s)	635, 677
LweI	GCATC	3 cut(s)	134, 529, 556
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	607, 763
MalI	GATC	5 cut(s)	69, 87, 192, 278, 803
MboI	GATC	5 cut(s)	67, 85, 190, 276, 801
MboII	GAAGA	8 cut(s)	26, 153, 200, 470, 548, 593, 602, 657
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	190, 801
MhlI	GDGCHC	3 cut(s)	110, 900, 933
MlsI	TGGCCA	2 cut(s)	5, 975
MluCI	AATT	6 cut(s)	19, 137, 196, 267, 462, 657
MluNI	TGGCCA	2 cut(s)	5, 975
Mly113I	GGCGCC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	906
MnlI	CCTC	6 cut(s)	28, 76, 476, 663, 736, 842
Mox20I	TGGCCA	2 cut(s)	5, 975
MscI	TGGCCA	2 cut(s)	5, 975
MslI	CAYNNNNRTG	1 cut(s)	893
Msp20I	TGGCCA	2 cut(s)	5, 975
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	464
NarI	GGCGCC	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	5 cut(s)	67, 85, 190, 276, 801
NlaIII	CATG	5 cut(s)	35, 74, 106, 835, 892
NlaIV	GGNNCC	7 cut(s)	76, 229, 427, 444, 803, 941, 1000
NmeAIII	GCCGAG	1 cut(s)	766
PagI	TCATGA	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	128, 625, 692
PluTI	GGCGCC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	933
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	7 cut(s)	76, 229, 427, 444, 803, 941, 1000
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	549
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	190, 801
RsaI	GTAC	5 cut(s)	101, 444, 941, 954, 1000
RsaNI	GTAC	5 cut(s)	100, 443, 940, 953, 999
RseI	CAYNNNNRTG	1 cut(s)	893
SacI	GAGCTC	1 cut(s)	933
SatI	GCNGC	3 cut(s)	127, 624, 691
Sau3AI	GATC	5 cut(s)	67, 85, 190, 276, 801
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	3 cut(s)	110, 900, 933
SfaNI	GCATC	3 cut(s)	134, 529, 556
SfcI	CTRYAG	1 cut(s)	545
SfoI	GGCGCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	893
Sse9I	AATT	6 cut(s)	19, 137, 196, 267, 462, 657
SsiI	CCGC	1 cut(s)	126
SspDI	GGCGCC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	933
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	368, 831
TaaI	ACNGT	3 cut(s)	213, 735, 939
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	2 cut(s)	295, 481
TasI	AATT	6 cut(s)	19, 137, 196, 267, 462, 657
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	502
TscAI	CASTG	3 cut(s)	286, 325, 549
TseI	GCWGC	2 cut(s)	623, 690
TspDTI	ATGAA	5 cut(s)	150, 423, 699, 716, 785
TspRI	CASTG	3 cut(s)	286, 325, 549
Van91I	CCANNNNNTGG	1 cut(s)	604
XapI	RAATTY	2 cut(s)	19, 137
XspI	CTAG	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.