Rmu_sc0000504.1_g000029

Transmembrane protein 97-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000504.1
N/A
Physical Location & Seq
Forward (+)
115076 .. 119458
4383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
atgagcgtaagtggtcgaaaattaccaaaacagtcatgtgcggccggaatttttccagaaaccggtgagagctccgacgagcgtgaaaacgttcactttaggtccggtccttattggagcttgatcaggaggttgaggcgagttaaacaagccaagaaacgcgagttttggtggccggagcttggagaaatcgcagctagttcattttctggctcggatcggtttcgagctccaccgccgcgtagccgccgtgagagagaaaacgggaactaccgaccagatgacatatcggagggtactgctgaccggaatattctgaagggtattgccgaccagaatattgtctggaggctactgccgaccagtgccgaccacgccttcaacaccttcatcgtcgacctcgagcccggcgccgttaagcacatcccaagcccaaagagaaaaggagggaaaaaaaacgatagtcgtcgaaattgcgagactcgacttccaagacgcatatcatctccttcctcccgcacacagtttcacagaaccccccaagagaaacacagacgcccatacaaaaagcgcaattaccttcataccctccaaatgggtgctctgttaaagcttgtggacgccgtcctcttcgtcttcttcgtcgtaatcgcggtggcggcgccgttaatcgacgcgcagacgtgtctgcctgagagcctcttcccgagcgtcttagttgagctcaagaactggtacgcgcgtgagtacggcgactatctcatgacccagaagcctcatttcatcgttgggatcgtctggcttgagctgctgtttcagtggcctcttgctcttgccaaccttcatcggtcgccggattccggttaccggtcaccggtcgccggaatccgatcacctgtcgccggagtccggtcacaggagaccgcgccggccactggccaccggagcacagcaaagtggaatgtgacttctctctctaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2781

Protein Analysis

327

Amino Acids

37.19

Weight (kDa)

10.27

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 410, 661
AccI GTMKAC 1 cut(s) 396
AccII CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
AciI CCGC 8 cut(s) 41, 236, 239, 247, 517, 653, 659, 924
AclI AACGTT 1 cut(s) 90
AclWI GGATC 2 cut(s) 225, 800
AcoI YGGCCR 4 cut(s) 42, 173, 930, 937
AcsI RAATTY 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 4 cut(s) 411, 556, 621, 662
AfaI GTAC 3 cut(s) 298, 737, 749
AflIII ACRYGT 1 cut(s) 683
AgeI ACCGGT 3 cut(s) 62, 867, 874
AgsI TTSAA 1 cut(s) 382
AjiI CACGTC 1 cut(s) 684
AluBI AGCT 8 cut(s) 72, 120, 181, 197, 230, 613, 724, 808
AluI AGCT 8 cut(s) 72, 120, 181, 197, 230, 613, 724, 808
Alw21I GWGCWC 5 cut(s) 74, 232, 604, 726, 950
Alw26I GTCTC 2 cut(s) 473, 914
AlwI GGATC 2 cut(s) 225, 800
Ama87I CYCGRG 2 cut(s) 401, 706
AoxI GGCC 5 cut(s) 42, 173, 821, 930, 937
ApeKI GCWGC 2 cut(s) 194, 808
ApoI RAATTY 1 cut(s) 48
AsiGI ACCGGT 3 cut(s) 62, 867, 874
Asp700I GAANNNNTTC 1 cut(s) 90
AspLEI GCGC 6 cut(s) 413, 573, 664, 679, 742, 928
AspS9I GGNCC 2 cut(s) 102, 107
AsuC2I CCSGG 1 cut(s) 408
AsuHPI GGTGA 3 cut(s) 77, 864, 885
AvaI CYCGRG 2 cut(s) 401, 706
AvaII GGWCC 2 cut(s) 102, 107
BaeI ACNNNNGTAYC 2 cut(s) 727, 760
BalI TGGCCA 1 cut(s) 939
BanI GGYRCC 2 cut(s) 410, 661
BanII GRGCYC 4 cut(s) 74, 232, 408, 726
BbsI GAAGAC 1 cut(s) 628
Bbv12I GWGCWC 5 cut(s) 74, 232, 604, 726, 950
BbvI GCAGC 2 cut(s) 206, 795
BceAI ACGGC 5 cut(s) 234, 398, 608, 649, 766
BclI TGATCA 1 cut(s) 123
BcnI CCSGG 1 cut(s) 408
BcoDI GTCTC 2 cut(s) 473, 914
BfaI CTAG 1 cut(s) 198
BfoI RGCGCY 2 cut(s) 414, 665
BisI GCNGC 6 cut(s) 42, 195, 239, 247, 660, 809
BlsI GCNGC 6 cut(s) 43, 196, 240, 248, 661, 810
Bme1390I CCNGG 1 cut(s) 408
Bme18I GGWCC 2 cut(s) 102, 107
BmeT110I CYCGRG 2 cut(s) 401, 706
BmgBI CACGTC 1 cut(s) 684
BmgT120I GGNCC 2 cut(s) 102, 107
BmiI GGNNCC 2 cut(s) 412, 663
BmrFI CCNGG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 628
BpmI CTGGAG 1 cut(s) 367
BpuEI CTTGAG 2 cut(s) 710, 824
BpuMI CCSGG 1 cut(s) 408
BsaHI GRCGYC 4 cut(s) 411, 556, 621, 662
BsaI GGTCTC 1 cut(s) 914
BsaWI WCCGGW 8 cut(s) 62, 104, 306, 860, 867, 874, 909, 942
Bse118I RCCGGY 4 cut(s) 62, 867, 874, 928
Bse1I ACTGG 3 cut(s) 363, 737, 940
BseGI GGATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 3 cut(s) 363, 737, 940
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 206, 795
Bsh1236I CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
Bsh1285I CGRYCG 3 cut(s) 45, 851, 879
BshFI GGCC 5 cut(s) 44, 175, 823, 932, 939
BshNI GGYRCC 2 cut(s) 410, 661
BshTI ACCGGT 3 cut(s) 62, 867, 874
BsiEI CGRYCG 3 cut(s) 45, 851, 879
BsiHKAI GWGCWC 5 cut(s) 74, 232, 604, 726, 950
BsiHKCI CYCGRG 2 cut(s) 401, 706
BsmAI GTCTC 2 cut(s) 473, 914
BsnI GGCC 5 cut(s) 44, 175, 823, 932, 939
Bso31I GGTCTC 1 cut(s) 914
BsoBI CYCGRG 2 cut(s) 401, 706
Bsp1286I GDGCHC 6 cut(s) 74, 232, 408, 604, 726, 950
Bsp143I GATC 4 cut(s) 123, 217, 792, 890
BspACI CCGC 8 cut(s) 41, 236, 239, 247, 517, 653, 659, 924
BspANI GGCC 5 cut(s) 44, 175, 823, 932, 939
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
BspHI TCATGA 1 cut(s) 762
BspLI GGNNCC 2 cut(s) 412, 663
BspPI GGATC 2 cut(s) 225, 800
BspT107I GGYRCC 2 cut(s) 410, 661
BspTNI GGTCTC 1 cut(s) 914
BsrFI RCCGGY 4 cut(s) 62, 867, 874, 928
BsrI ACTGG 3 cut(s) 363, 737, 940
BssAI RCCGGY 4 cut(s) 62, 867, 874, 928
BssMI GATC 4 cut(s) 123, 217, 792, 890
BssNI GRCGYC 4 cut(s) 411, 556, 621, 662
Bst4CI ACNGT 2 cut(s) 33, 525
Bst6I CTCTTC 2 cut(s) 635, 707
BstACI GRCGYC 4 cut(s) 411, 556, 621, 662
BstC8I GCNNGC 1 cut(s) 930
BstDEI CTNAG 3 cut(s) 693, 715, 978
BstEII GGTNACC 2 cut(s) 863, 870
BstF5I GGATG 1 cut(s) 423
BstFNI CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
BstH2I RGCGCY 2 cut(s) 414, 665
BstHHI GCGC 6 cut(s) 413, 573, 664, 679, 742, 928
BstKTI GATC 4 cut(s) 126, 220, 795, 893
BstMAI GTCTC 2 cut(s) 473, 914
BstMBI GATC 4 cut(s) 123, 217, 792, 890
BstMCI CGRYCG 3 cut(s) 45, 851, 879
BstMWI GCNNNNNNNGC 4 cut(s) 374, 659, 808, 945
BstPI GGTNACC 2 cut(s) 863, 870
BstSCI CCNGG 1 cut(s) 406
BstUI CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
BstV1I GCAGC 2 cut(s) 206, 795
BstV2I GAAGAC 1 cut(s) 628
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 5 cut(s) 44, 175, 823, 932, 939
BtrI CACGTC 1 cut(s) 684
BtsCI GGATG 1 cut(s) 423
BtsIMutI CAGTG 3 cut(s) 370, 824, 933
Cac8I GCNNGC 1 cut(s) 930
CciI TCATGA 1 cut(s) 762
CfoI GCGC 6 cut(s) 413, 573, 664, 679, 742, 928
Cfr10I RCCGGY 4 cut(s) 62, 867, 874, 928
Cfr13I GGNCC 2 cut(s) 102, 107
CseI GACGC 5 cut(s) 504, 564, 629, 683, 700
Csp6I GTAC 3 cut(s) 297, 736, 748
CspAI ACCGGT 3 cut(s) 62, 867, 874
CviAII CATG 2 cut(s) 36, 763
CviQI GTAC 3 cut(s) 297, 736, 748
DdeI CTNAG 3 cut(s) 693, 715, 978
DinI GGCGCC 2 cut(s) 412, 663
DpnI GATC 4 cut(s) 125, 219, 794, 892
DpnII GATC 4 cut(s) 123, 217, 792, 890
EaeI YGGCCR 4 cut(s) 42, 173, 930, 937
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 2 cut(s) 635, 707
EarI CTCTTC 2 cut(s) 635, 707
Ecl136II GAGCTC 3 cut(s) 72, 230, 724
EclXI CGGCCG 1 cut(s) 42
Eco24I GRGCYC 4 cut(s) 74, 232, 408, 726
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 2 cut(s) 102, 107
Eco52I CGGCCG 1 cut(s) 42
Eco53kI GAGCTC 3 cut(s) 72, 230, 724
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 2 cut(s) 401, 706
Eco91I GGTNACC 2 cut(s) 863, 870
EcoICRI GAGCTC 3 cut(s) 72, 230, 724
EcoO65I GGTNACC 2 cut(s) 863, 870
EcoT38I GRGCYC 4 cut(s) 74, 232, 408, 726
EgeI GGCGCC 2 cut(s) 412, 663
EheI GGCGCC 2 cut(s) 412, 663
FaeI CATG 2 cut(s) 39, 766
FaiI YATR 6 cut(s) 37, 287, 500, 562, 585, 764
FatI CATG 2 cut(s) 35, 762
FauI CCCGC 1 cut(s) 524
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 42, 195, 239, 247, 660, 809
FokI GGATG 1 cut(s) 410
FriOI GRGCYC 4 cut(s) 74, 232, 408, 726
Fsp4HI GCNGC 6 cut(s) 42, 195, 239, 247, 660, 809
FspBI CTAG 1 cut(s) 198
GlaI GCGC 6 cut(s) 412, 572, 663, 678, 741, 927
GluI GCNGC 6 cut(s) 42, 195, 239, 247, 660, 809
GsuI CTGGAG 1 cut(s) 367
HaeII RGCGCY 2 cut(s) 414, 665
HaeIII GGCC 5 cut(s) 44, 175, 823, 932, 939
HgaI GACGC 5 cut(s) 504, 564, 629, 683, 700
HhaI GCGC 6 cut(s) 413, 573, 664, 679, 742, 928
Hin1I GRCGYC 4 cut(s) 411, 556, 621, 662
Hin1II CATG 2 cut(s) 39, 766
Hin6I GCGC 6 cut(s) 411, 571, 662, 677, 740, 926
HinP1I GCGC 6 cut(s) 411, 571, 662, 677, 740, 926
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 4 cut(s) 481, 857, 885, 906
HphI GGTGA 3 cut(s) 77, 864, 885
Hpy166II GTNNAC 3 cut(s) 94, 397, 619
Hpy188I TCNGA 5 cut(s) 76, 217, 292, 318, 890
Hpy188III TCNNGA 6 cut(s) 56, 127, 346, 706, 727, 763
Hpy8I GTNNAC 3 cut(s) 94, 397, 619
Hpy99I CGWCG 5 cut(s) 80, 398, 471, 647, 677
HpyAV CCTTC 6 cut(s) 313, 388, 397, 519, 590, 851
HpyCH4III ACNGT 2 cut(s) 33, 525
HpyCH4IV ACGT 2 cut(s) 90, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 659, 808, 945
HpyF3I CTNAG 3 cut(s) 693, 715, 978
HpySE526I ACGT 2 cut(s) 90, 683
Hsp92I GRCGYC 4 cut(s) 411, 556, 621, 662
Hsp92II CATG 2 cut(s) 39, 766
HspAI GCGC 6 cut(s) 411, 571, 662, 677, 740, 926
KasI GGCGCC 2 cut(s) 410, 661
KroI GCCGGC 1 cut(s) 928
KroNI GCCGGC 1 cut(s) 930
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 4 cut(s) 123, 217, 792, 890
LmnI GCTCC 5 cut(s) 77, 117, 178, 235, 945
Lsp1109I GCAGC 2 cut(s) 206, 795
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 90, 683
MaeIII GTNAC 4 cut(s) 863, 870, 912, 964
MalI GATC 4 cut(s) 125, 219, 794, 892
MboI GATC 4 cut(s) 123, 217, 792, 890
MboII GAAGA 4 cut(s) 622, 628, 631, 694
MhlI GDGCHC 6 cut(s) 74, 232, 408, 604, 726, 950
MlsI TGGCCA 1 cut(s) 939
MluCI AATT 4 cut(s) 20, 48, 472, 574
MluNI TGGCCA 1 cut(s) 939
Mly113I GGCGCC 2 cut(s) 411, 662
MlyI GAGTC 2 cut(s) 475, 915
MmeI TCCRAC 1 cut(s) 99
Mox20I TGGCCA 1 cut(s) 939
MroNI GCCGGC 1 cut(s) 928
MroXI GAANNNNTTC 1 cut(s) 90
MscI TGGCCA 1 cut(s) 939
MseI TTAA 4 cut(s) 144, 417, 608, 668
Msp20I TGGCCA 1 cut(s) 939
MspR9I CCNGG 1 cut(s) 408
MvnI CGCG 7 cut(s) 162, 241, 653, 677, 740, 742, 926
MwoI GCNNNNNNNGC 4 cut(s) 374, 659, 808, 945
NaeI GCCGGC 1 cut(s) 930
NarI GGCGCC 2 cut(s) 411, 662
NciI CCSGG 1 cut(s) 408
NdeII GATC 4 cut(s) 123, 217, 792, 890
NgoMIV GCCGGC 1 cut(s) 928
NlaIII CATG 2 cut(s) 39, 766
NlaIV GGNNCC 2 cut(s) 412, 663
NmuCI GTSAC 3 cut(s) 870, 912, 964
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 1 cut(s) 762
PcsI WCGNNNNNNNCGW 3 cut(s) 399, 639, 792
PdiI GCCGGC 1 cut(s) 930
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 857, 885
PflFI GACNNNGTC 1 cut(s) 623
PinAI ACCGGT 3 cut(s) 62, 867, 874
PkrI GCNGC 6 cut(s) 43, 196, 240, 248, 661, 810
PleI GAGTC 2 cut(s) 475, 914
PluTI GGCGCC 2 cut(s) 414, 665
PpsI GAGTC 2 cut(s) 475, 914
Psp124BI GAGCTC 3 cut(s) 74, 232, 726
Psp1406I AACGTT 1 cut(s) 90
PspEI GGTNACC 2 cut(s) 863, 870
PspN4I GGNNCC 2 cut(s) 412, 663
PspPI GGNCC 2 cut(s) 102, 107
PspXI VCTCGAGB 1 cut(s) 401
PsyI GACNNNGTC 1 cut(s) 623
RsaI GTAC 3 cut(s) 298, 737, 749
RsaNI GTAC 3 cut(s) 297, 736, 748
SacI GAGCTC 3 cut(s) 74, 232, 726
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 144, 417, 608, 668
SatI GCNGC 6 cut(s) 42, 195, 239, 247, 660, 809
Sau3AI GATC 4 cut(s) 123, 217, 792, 890
Sau96I GGNCC 2 cut(s) 102, 107
SchI GAGTC 2 cut(s) 475, 915
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 6 cut(s) 74, 232, 408, 604, 726, 950
SfoI GGCGCC 2 cut(s) 412, 663
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 2 cut(s) 102, 107
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 3 cut(s) 401, 725, 803
SmoI CTYRAG 3 cut(s) 401, 725, 803
Sse9I AATT 4 cut(s) 20, 48, 472, 574
SsiI CCGC 8 cut(s) 41, 236, 239, 247, 517, 653, 659, 924
SspDI GGCGCC 2 cut(s) 410, 661
SspI AATATT 2 cut(s) 313, 340
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 3 cut(s) 74, 232, 726
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 33, 525
TaiI ACGT 2 cut(s) 93, 686
TaqI TCGA 7 cut(s) 16, 226, 396, 402, 469, 484, 672
TaqII GACCGA 1 cut(s) 837
TasI AATT 4 cut(s) 20, 48, 472, 574
TauI GCSGC 4 cut(s) 44, 241, 249, 662
TfiI GAWTC 2 cut(s) 857, 885
Tru1I TTAA 4 cut(s) 144, 417, 608, 668
Tru9I TTAA 4 cut(s) 144, 417, 608, 668
TscAI CASTG 3 cut(s) 370, 824, 940
TseFI GTSAC 3 cut(s) 870, 912, 964
TseI GCWGC 2 cut(s) 194, 808
Tsp45I GTSAC 3 cut(s) 870, 912, 964
TspDTI ATGAA 5 cut(s) 192, 379, 572, 772, 833
TspRI CASTG 3 cut(s) 370, 824, 940
Tth111I GACNNNGTC 1 cut(s) 623
VpaK11BI GGWCC 2 cut(s) 102, 107
XapI RAATTY 1 cut(s) 48
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.