Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000507.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

46321 .. 46698

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000507.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgggtgtgcctcaggattcttatgtgctctgtatggttttccaaaaggatgggataggaccaagaagtaataaacaatatggtgcacccttcaaagaggaagactggactgatgatgaggttgaaactgatgtagttccatatgtatacatgtttgagccaaaccttgttcatgcaaacatgcctgagccagaccttgttcaagcaaacatacctgatcaagtacttgttaattcaaacatcactgggcccgatcttgtttatggaaatgtgcccaaccaataccttgtttatccaaacatgcctcaatcagaccttggttatgcaaacatgcccgagccatacctggtcttgcccagccatacctggatgtgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

125

Amino Acids

14.16

Weight (kDa)

4.05

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	94, 125, 203, 237
AjnI	CCWGG	2 cut(s)	345, 365
Alw21I	GWGCWC	2 cut(s)	30, 88
Alw44I	GTGCAC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	248
ApaI	GGGCCC	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	84
AspS9I	GGNCC	3 cut(s)	59, 248, 249
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	12
BaeGI	GKGCMC	3 cut(s)	88, 252, 276
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	30, 88
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	347, 367
BclI	TGATCA	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	2 cut(s)	347, 367
Bme18I	GGWCC	1 cut(s)	59
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	59, 248, 249
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	347, 367
BmrI	ACTGGG	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	316
Bse1I	ACTGG	2 cut(s)	110, 250
Bse21I	CCTNAGG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	347, 367
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	55, 375
BseMII	CTCAG	2 cut(s)	26, 177
BseNI	ACTGG	2 cut(s)	110, 250
BseSI	GKGCMC	3 cut(s)	88, 252, 276
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	250
BsiHKAI	GWGCWC	2 cut(s)	30, 88
BsiHKCI	CYCGRG	1 cut(s)	335
BsnI	GGCC	1 cut(s)	250
BsoBI	CYCGRG	1 cut(s)	335
Bsp120I	GGGCCC	1 cut(s)	248
Bsp1286I	GDGCHC	4 cut(s)	30, 88, 252, 276
Bsp143I	GATC	2 cut(s)	217, 253
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	2 cut(s)	25, 178
BspLI	GGNNCC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	110, 250
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	2 cut(s)	217, 253
BssNAI	GTATAC	1 cut(s)	148
BssT1I	CCWWGG	1 cut(s)	316
Bst1107I	GTATAC	1 cut(s)	148
Bst2UI	CCWGG	2 cut(s)	347, 367
BstDEI	CTNAG	2 cut(s)	12, 186
BstF5I	GGATG	2 cut(s)	55, 375
BstKTI	GATC	2 cut(s)	220, 256
BstMBI	GATC	2 cut(s)	217, 253
BstNI	CCWGG	2 cut(s)	347, 367
BstNSI	RCATGY	4 cut(s)	154, 184, 304, 334
BstSCI	CCNGG	2 cut(s)	345, 365
BstSLI	GKGCMC	3 cut(s)	88, 252, 276
BstV2I	GAAGAC	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	55, 375
BtsIMutI	CAGTG	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	59, 248, 249
CsiI	ACCWGGT	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	5 cut(s)	151, 173, 181, 301, 331
CviJI	RGCY	5 cut(s)	160, 190, 250, 340, 360
CviKI_1	RGCY	5 cut(s)	160, 190, 250, 340, 360
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	2 cut(s)	12, 186
DpnI	GATC	2 cut(s)	219, 255
DpnII	GATC	2 cut(s)	217, 253
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	59
Eco81I	CCTNAGG	1 cut(s)	12
Eco88I	CYCGRG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	345, 365
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	154, 176, 184, 304, 334
FatI	CATG	5 cut(s)	150, 172, 180, 300, 330
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	252
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	5 cut(s)	154, 176, 184, 304, 334
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	2 cut(s)	86, 148
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	14
Hpy8I	GTNNAC	2 cut(s)	86, 148
HpyAV	CCTTC	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	86, 176, 326
HpyF3I	CTNAG	2 cut(s)	12, 186
Hsp92II	CATG	5 cut(s)	154, 176, 184, 304, 334
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 253
LpnPI	CCDG	9 cut(s)	91, 198, 204, 228, 231, 332, 352, 359, 370
MabI	ACCWGGT	1 cut(s)	345
MalI	GATC	2 cut(s)	219, 255
MboI	GATC	2 cut(s)	217, 253
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	4 cut(s)	30, 88, 252, 276
MluCI	AATT	1 cut(s)	232
MnlI	CCTC	4 cut(s)	21, 91, 112, 315
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	347, 367
MvaI	CCWGG	2 cut(s)	347, 367
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	2 cut(s)	217, 253
NlaIII	CATG	5 cut(s)	154, 176, 184, 304, 334
NlaIV	GGNNCC	1 cut(s)	250
NspI	RCATGY	4 cut(s)	154, 184, 304, 334
PciI	ACATGT	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	345, 365
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	345, 365
PspN4I	GGNNCC	1 cut(s)	250
PspOMI	GGGCCC	1 cut(s)	248
PspPI	GGNCC	3 cut(s)	59, 248, 249
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	2 cut(s)	217, 253
Sau96I	GGNCC	3 cut(s)	59, 248, 249
ScaI	AGTACT	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	347, 367
SduI	GDGCHC	4 cut(s)	30, 88, 252, 276
SetI	ASST	8 cut(s)	123, 168, 198, 217, 288, 318, 348, 368
SexAI	ACCWGGT	1 cut(s)	345
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	345, 365
StyI	CCWWGG	1 cut(s)	316
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	250
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	59
XceI	RCATGY	4 cut(s)	154, 184, 304, 334
XmiI	GTMKAC	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.