Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000510.1

Orthogroup ID

OG0031076

Physical Location & Seq

Genomic Coordinates Reverse (-)

10598 .. 11148

Gene Structure 551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgatttacacggcgatagacacgttctatctgagcgatgaggacctggagaactcgccgtcgagaagggacggcatagatgaagccacagagaccacgctcagaatctacggctgtgatttgattcaagagagcggcattctgctcagaataatggctgaaaatggtccgaaagtaatccaggcaaacctcgaacggcaccagttcaattctccctcctccggatatttcgagtcaaactacaagtatggagatgatcaatggagtgccagcttcaaaacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030054 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

94

Amino Acids

10.74

Weight (kDa)

4.38

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031076)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8359795.1_g000001 Rmu_sc0000510.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccBSI	CCGCTC	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	1 cut(s)	135
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	128, 208, 277
AjnI	CCWGG	2 cut(s)	45, 180
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	43, 167
AvaII	GGWCC	2 cut(s)	43, 167
BanI	GGYRCC	1 cut(s)	198
BceAI	ACGGC	5 cut(s)	27, 43, 88, 127, 212
BciT130I	CCWGG	2 cut(s)	47, 182
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	283
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	47, 182
Bme18I	GGWCC	2 cut(s)	43, 167
BmgT120I	GGNCC	2 cut(s)	43, 167
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	47, 182
BpmI	CTGGAG	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	202
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	47, 182
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	23, 115, 160
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	24, 114, 159
BspEI	TCCGGA	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	47, 182
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	3 cut(s)	32, 101, 146
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	2 cut(s)	47, 182
BstSCI	CCNGG	2 cut(s)	45, 180
BtgZI	GCGATG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	43, 167
CviJI	RGCY	4 cut(s)	86, 114, 158, 273
CviKI_1	RGCY	4 cut(s)	86, 114, 158, 273
DdeI	CTNAG	3 cut(s)	32, 101, 146
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	43, 167
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	45, 180
FaiI	YATR	2 cut(s)	77, 249
FaqI	GGGAC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	1 cut(s)	136
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	283
GluI	GCNGC	1 cut(s)	136
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	222
HinfI	GANTC	3 cut(s)	105, 124, 233
HpaII	CCGG	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	33, 104, 149, 171
Hpy188III	TCNNGA	3 cut(s)	63, 128, 222
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	23
HpyF3I	CTNAG	3 cut(s)	32, 101, 146
HpySE526I	ACGT	1 cut(s)	23
Kpn2I	TCCGGA	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	32, 59, 167, 194, 215, 235
MaeI	CTAG	1 cut(s)	283
MaeII	ACGT	1 cut(s)	23
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	1 cut(s)	256
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	34, 200, 226, 229
MroI	TCCGGA	1 cut(s)	221
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	47, 182
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	47, 182
NdeII	GATC	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	200
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	105, 124
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	43
Psp6I	CCWGG	2 cut(s)	45, 180
PspGI	CCWGG	2 cut(s)	45, 180
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	43, 167
PspPPI	RGGWCCY	1 cut(s)	43
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	43, 167
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	47, 182
SetI	ASST	5 cut(s)	26, 48, 192, 275, 284
SinI	GGWCC	2 cut(s)	43, 167
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	283
StyD4I	CCNGG	2 cut(s)	45, 180
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	3 cut(s)	62, 192, 231
TasI	AATT	1 cut(s)	208
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	105, 124
TspDTI	ATGAA	1 cut(s)	96
VpaK11BI	GGWCC	2 cut(s)	43, 167
XspI	CTAG	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.