Rmu_sc0000516.1_g000043

Belongs to the TPP enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000516.1
N/A
Physical Location & Seq
Forward (+)
190305 .. 191331
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 297 bp
atgatccgatgtggacaaaataccatcatatttcttatcaacaacaaaggctatacaatcgaagtagagattcatgatggccattttcagcaggacgcattagctgctatcagaggaggccgtatccctccacctgaaagcatgccatcttacgaagaggttaggagatggtttcaagaattcattttccgggatgcagctagaactccagaaagagagcaaaaagctcctaaaaggcctgttcatattagtgcttggaagcttagcaaagcttgcaaagctagaatccttaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130
Pfam Domains
Protein Families
TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

98

Amino Acids

11.4

Weight (kDa)

9.75

Isoelectric Point (pI)

72.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 179
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 176
AluBI AGCT 6 cut(s) 104, 200, 227, 262, 272, 281
AluI AGCT 6 cut(s) 104, 200, 227, 262, 272, 281
AoxI GGCC 3 cut(s) 79, 118, 236
ApeKI GCWGC 2 cut(s) 104, 197
ApoI RAATTY 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 191
BalI TGGCCA 1 cut(s) 81
BbvI GCAGC 2 cut(s) 91, 209
BccI CCATC 4 cut(s) 32, 71, 154, 162
BceAI ACGGC 1 cut(s) 105
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 191
BfaI CTAG 2 cut(s) 201, 282
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 2 cut(s) 105, 198
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 2 cut(s) 106, 199
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 129
BseXI GCAGC 2 cut(s) 91, 209
BshFI GGCC 3 cut(s) 81, 120, 238
BsiSI CCGG 1 cut(s) 190
BsnI GGCC 3 cut(s) 81, 120, 238
Bsp143I GATC 1 cut(s) 3
Bsp1720I GCTNAGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 81, 120, 238
BspHI TCATGA 1 cut(s) 73
BspTI CTTAAG 1 cut(s) 290
BssMI GATC 1 cut(s) 3
Bst6I CTCTTC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 290
BstAPI GCANNNNNTGC 2 cut(s) 104, 273
BstC8I GCNNGC 2 cut(s) 143, 274
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 104, 273, 278
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 91, 209
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 3 cut(s) 81, 120, 238
BtsCI GGATG 1 cut(s) 199
Cac8I GCNNGC 2 cut(s) 143, 274
CciI TCATGA 1 cut(s) 73
CseI GACGC 1 cut(s) 104
CviAII CATG 2 cut(s) 74, 142
DdeI CTNAG 1 cut(s) 263
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco147I AGGCCT 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 179
FaeI CATG 2 cut(s) 77, 145
FaiI YATR 5 cut(s) 29, 54, 75, 143, 246
FatI CATG 2 cut(s) 73, 141
Fnu4HI GCNGC 2 cut(s) 105, 198
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 105, 198
FspBI CTAG 2 cut(s) 201, 282
GluI GCNGC 2 cut(s) 105, 198
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 3 cut(s) 81, 120, 238
HapII CCGG 1 cut(s) 190
HgaI GACGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 77, 145
HindIII AAGCTT 2 cut(s) 260, 270
HinfI GANTC 2 cut(s) 70, 285
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 8, 113
Hpy188III TCNNGA 3 cut(s) 74, 176, 209
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 197, 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 273, 278
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 2 cut(s) 77, 145
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 5 cut(s) 77, 147, 203, 222, 252
Lsp1109I GCAGC 2 cut(s) 91, 209
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 201, 282
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 1 cut(s) 179
MluNI TGGCCA 1 cut(s) 81
MnlI CCTC 4 cut(s) 107, 110, 138, 151
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 191
MwoI GCNNNNNNNGC 3 cut(s) 104, 273, 278
NciI CCSGG 1 cut(s) 191
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 77, 145
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 2 cut(s) 70, 285
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 2 cut(s) 106, 199
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 2 cut(s) 105, 198
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 191
SetI ASST 8 cut(s) 106, 136, 162, 202, 229, 264, 274, 283
SfaNI GCATC 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 145
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 238
SspMI CTAG 2 cut(s) 201, 282
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 179
TfiI GAWTC 2 cut(s) 70, 285
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 2 cut(s) 104, 197
TspDTI ATGAA 3 cut(s) 62, 172, 233
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 145
XspI CTAG 2 cut(s) 201, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.