Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000530.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

11781 .. 12236

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggacgatgcttttcagttcattaatcagaatcatggactcagtaccgaagctaactatcgctacaccggtgtagatggtacatgcaatgcgcaaaaggaagtaagccatgcagcctcgataactggccacgaagatatgcctgctaacagtgaaagcgtacttctcaaggcagttgctaatcaacatatttctgttgccattgatgctagcggatctgatttccaattctattcaagtggtgttttcacaggaacctgtggaacgagtctctaccatggtgttactgctgttgtttatggcatttcgatgatgggactaagtattgcttggttaagaactcatggggcgcagaatggagagaagaaggttacatatataagaatgcaaagagatgttgctgcacaggaaggtctctgtggcattgctatggcagcctcttacaccactgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

151

Amino Acids

16.07

Weight (kDa)

5.55

Isoelectric Point (pI)

11.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 149	3.9e-26	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	93
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	127
AfaI	GTAC	3 cut(s)	46, 82, 162
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	237
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
Alw26I	GTCTC	2 cut(s)	275, 419
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	113, 401, 434
AseI	ATTAAT	1 cut(s)	24
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	94, 352
AsuNHI	GCTAGC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	129
BbvI	GCAGC	3 cut(s)	125, 388, 446
BccI	CCATC	2 cut(s)	71, 307
BcoDI	GTCTC	2 cut(s)	275, 419
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	3 cut(s)	114, 402, 435
BlsI	GCNGC	3 cut(s)	115, 403, 436
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	196
BmtI	GCTAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	94, 423
BseDI	CCNNGG	1 cut(s)	277
BseMI	GCAATG	2 cut(s)	94, 423
BseMII	CTCAG	1 cut(s)	55
BseNI	ACTGG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	125, 388, 446
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	129
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	275, 419
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	2 cut(s)	94, 423
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	144, 211
BstDEI	CTNAG	2 cut(s)	41, 320
BstDSI	CCRYGG	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	94, 352
BstKTI	GATC	1 cut(s)	218
BstMAI	GTCTC	2 cut(s)	275, 419
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 434
BstNSI	RCATGY	1 cut(s)	87
BstV1I	GCAGC	3 cut(s)	125, 388, 446
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	277
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	2 cut(s)	157, 447
Cac8I	GCNNGC	2 cut(s)	144, 211
CfoI	GCGC	2 cut(s)	94, 352
Cfr10I	RCCGGY	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	45, 81, 161
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	5 cut(s)	35, 84, 110, 278, 344
CviJI	RGCY	5 cut(s)	53, 108, 116, 129, 437
CviKI_1	RGCY	5 cut(s)	53, 108, 116, 129, 437
CviQI	GTAC	3 cut(s)	45, 81, 161
DdeI	CTNAG	2 cut(s)	41, 320
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
EaeI	YGGCCR	1 cut(s)	127
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	5 cut(s)	38, 87, 113, 281, 347
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	5 cut(s)	34, 83, 109, 277, 343
Fnu4HI	GCNGC	3 cut(s)	114, 402, 435
Fsp4HI	GCNGC	3 cut(s)	114, 402, 435
FspBI	CTAG	1 cut(s)	210
FspI	TGCGCA	1 cut(s)	93
GlaI	GCGC	2 cut(s)	93, 351
GluI	GCNGC	3 cut(s)	114, 402, 435
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	2 cut(s)	94, 352
Hin1II	CATG	5 cut(s)	38, 87, 113, 281, 347
Hin6I	GCGC	2 cut(s)	92, 350
HinP1I	GCGC	2 cut(s)	92, 350
HinfI	GANTC	3 cut(s)	31, 39, 268
HpaII	CCGG	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	30, 220
HpyAV	CCTTC	2 cut(s)	361, 404
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	4 cut(s)	87, 113, 388, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 434
HpyF3I	CTNAG	2 cut(s)	41, 320
Hsp92II	CATG	5 cut(s)	38, 87, 113, 281, 347
HspAI	GCGC	2 cut(s)	92, 350
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	6 cut(s)	82, 111, 156, 237, 271, 392
Lsp1109I	GCAGC	3 cut(s)	125, 388, 446
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	283, 370
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	2 cut(s)	146, 376
MflI	RGATCY	1 cut(s)	215
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	1 cut(s)	227
MluNI	TGGCCA	1 cut(s)	129
MlyI	GAGTC	2 cut(s)	33, 277
MnlI	CCTC	2 cut(s)	127, 448
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	2 cut(s)	24, 335
MslI	CAYNNNNRTG	2 cut(s)	308, 428
Msp20I	TGGCCA	1 cut(s)	129
MspI	CCGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	206, 434
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	215
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	5 cut(s)	38, 87, 113, 281, 347
NlaIV	GGNNCC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	93
NspI	RCATGY	1 cut(s)	87
PctI	GAATGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	31
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	115, 403, 436
PleI	GAGTC	2 cut(s)	33, 276
PpsI	GAGTC	2 cut(s)	33, 276
PshBI	ATTAAT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	3 cut(s)	46, 82, 162
RsaNI	GTAC	3 cut(s)	45, 81, 161
RseI	CAYNNNNRTG	2 cut(s)	308, 428
SaqAI	TTAA	2 cut(s)	24, 335
SatI	GCNGC	3 cut(s)	114, 402, 435
Sau3AI	GATC	1 cut(s)	215
SchI	GAGTC	2 cut(s)	33, 277
SetI	ASST	4 cut(s)	55, 260, 372, 415
SfaNI	GCATC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	308, 428
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	119, 308
TasI	AATT	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	24, 335
Tru9I	TTAA	2 cut(s)	24, 335
TscAI	CASTG	2 cut(s)	157, 454
TseI	GCWGC	3 cut(s)	113, 401, 434
TspDTI	ATGAA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	157, 454
VspI	ATTAAT	1 cut(s)	24
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.