Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000530.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

12967 .. 13284

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtcaacggttgaaacccaaggctgttggggtggcttaatggatgatgtctttcgtttcatatatgaaaaccatggacttagcaccgaggctaattatccctgtacccgtgttgagggtatatgcaatgccaagaaggaagcaagccatgcagcctcgataactagccatgaagatatgcctgcaaacagtgaaagcgcacttcttaaggctgttgccaatcaaccaatttctgttgccatcgatgctagtggatctgatttccaattctgtaagtctataaatgttagtgaaggtgaagccaagaaacatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

105

Amino Acids

11.3

Weight (kDa)

5.02

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	5 - 93	3.8e-18	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	262
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	14
AlwI	GGATC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	165, 249
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	19, 73, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	19, 73, 87
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	164
BshVI	ATCGAT	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	254
Bsp19I	CCATGG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	243
BspPI	GGATC	1 cut(s)	262
BspTI	CTTAAG	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	133
BssECI	CCNNGG	3 cut(s)	19, 73, 87
BssMI	GATC	1 cut(s)	254
BssT1I	CCWWGG	2 cut(s)	19, 73
Bst4CI	ACNGT	2 cut(s)	10, 191
BstAFI	CTTAAG	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	145, 183
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 245
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	254
BstYI	RGATCY	1 cut(s)	254
Bsu15I	ATCGAT	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	2 cut(s)	145, 183
CfoI	GCGC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	243
Csp6I	GTAC	1 cut(s)	105
CviAII	CATG	3 cut(s)	74, 149, 170
CviJI	RGCY	8 cut(s)	24, 36, 92, 147, 155, 168, 212, 302
CviKI_1	RGCY	8 cut(s)	24, 36, 92, 147, 155, 168, 212, 302
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eco130I	CCWWGG	2 cut(s)	19, 73
EcoT14I	CCWWGG	2 cut(s)	19, 73
ErhI	CCWWGG	2 cut(s)	19, 73
FaeI	CATG	3 cut(s)	77, 152, 173
FatI	CATG	3 cut(s)	73, 148, 169
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	165, 249
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	77, 152, 173
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	259
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	130, 287
HpyCH4III	ACNGT	2 cut(s)	10, 191
HpyCH4V	TGCA	3 cut(s)	126, 152, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 245
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	3 cut(s)	77, 152, 173
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	254
LpnPI	CCDG	2 cut(s)	115, 195
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	165, 249
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	254
MluCI	AATT	3 cut(s)	94, 228, 266
MnlI	CCTC	3 cut(s)	82, 109, 166
MseI	TTAA	2 cut(s)	38, 207
MspCI	CTTAAG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	149, 245
NcoI	CCATGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	77, 152, 173
PkrI	GCNGC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	254
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	38, 207
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	254
SetI	ASST	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	3 cut(s)	94, 228, 266
SspMI	CTAG	2 cut(s)	165, 249
StyI	CCWWGG	2 cut(s)	19, 73
TaaI	ACNGT	2 cut(s)	10, 191
TaqI	TCGA	2 cut(s)	158, 243
TasI	AATT	3 cut(s)	94, 228, 266
Tru1I	TTAA	2 cut(s)	38, 207
Tru9I	TTAA	2 cut(s)	38, 207
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	152
TspDTI	ATGAA	3 cut(s)	49, 81, 186
TspRI	CASTG	1 cut(s)	196
Vha464I	CTTAAG	1 cut(s)	206
XspI	CTAG	2 cut(s)	165, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.