Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000531.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

70046 .. 71506

Gene Structure 1461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgtttgctcccattccgccgccagttacaccactgatacacaagagaaaagaccagccccacttagaaggtctcagacctaacgaaggtcttgagggtggaattggggatgaagccgacaatgatgatgtgatgccgaggatgggaatcgaccagctccagggtgccaataagggtagtaatgctgcattgggaaggcggaggagaagaaagagaagacggtcttgtgccaagctccgatcagccgctcaagtccaaatggtccacaaccatctcctcaaaacctggttcttccccgacgtctacgcagctaccgctctcacgaacgcttccatgaagctcaacctcatggaagatgcactcaacgtgttcgacgaaatgcctcaccgaaacttggctgacaatgatgatgtgatgccggggatgggaatcgaccagctccagggcgcggaggagaagaaagagaagacggtgtttgatgtgaagcttgattattggtgggcattcattggaggtcctatagcatctgagaccctatgccaagaccactcctcttctttcccccctcacaaattcacatttcctcttattctcaaagcttgtgccaagctccgatcaaccgctcaagtccaaatggtccacaaccatctcctcaaaacctggttcttccccgacgtctacgcagctaccactctcacgaacgcttccatgaagctcaacctcatggaagatgcactcaacgtgttcgacgaaatgcctcaccgaaacttggctcccataaacactgtgatttccgggttgttgcacaacggtcatcgcagagaggctttcaaggtgttcaagagcgttgtttttggagggcacgggttgaattcggttactatagctagtgtgtgttcagcgtgtgacaatgcgaagcaggagatgggaattgattgcgtggcagtgaagcttggggttgaaagtgatgtttatgttgctacctcagatgtgcatggtttgatcatgaaagatgatggtatcggcgttggagttcggatgcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

348

Amino Acids

38.57

Weight (kDa)

7.24

Isoelectric Point (pI)

49.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	303, 678
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	3 cut(s)	248, 317, 623
AccI	GTMKAC	2 cut(s)	303, 678
AccII	CGCG	1 cut(s)	449
AciI	CCGC	8 cut(s)	17, 20, 199, 246, 315, 449, 621, 1042
AcsI	RAATTY	2 cut(s)	572, 871
AcyI	GRCGYC	2 cut(s)	300, 675
AfiI	CCNNNNNNNGG	8 cut(s)	86, 143, 160, 394, 425, 442, 448, 769
AflIII	ACRYGT	2 cut(s)	366, 741
AgsI	TTSAA	4 cut(s)	832, 841, 871, 962
AjnI	CCWGG	4 cut(s)	159, 284, 441, 659
Alw26I	GTCTC	2 cut(s)	77, 524
ApeKI	GCWGC	3 cut(s)	185, 308, 683
ApoI	RAATTY	2 cut(s)	572, 871
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	3 cut(s)	262, 515, 637
AsuC2I	CCSGG	2 cut(s)	420, 796
AsuHPI	GGTGA	2 cut(s)	377, 752
AvaII	GGWCC	3 cut(s)	262, 515, 637
BaeGI	GKGCMC	1 cut(s)	864
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	223, 473
BbvI	GCAGC	3 cut(s)	172, 320, 695
BccI	CCATC	6 cut(s)	136, 279, 418, 654, 919, 1010
BciT130I	CCWGG	4 cut(s)	161, 286, 443, 661
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	2 cut(s)	420, 796
BcoDI	GTCTC	2 cut(s)	77, 524
BfaI	CTAG	1 cut(s)	888
BfmI	CTRYAG	2 cut(s)	519, 882
BisI	GCNGC	5 cut(s)	20, 186, 246, 309, 684
BlsI	GCNGC	5 cut(s)	21, 187, 247, 310, 685
Bme1390I	CCNGG	6 cut(s)	161, 286, 420, 443, 661, 796
Bme18I	GGWCC	3 cut(s)	262, 515, 637
BmgT120I	GGNCC	3 cut(s)	262, 515, 637
BmiI	GGNNCC	2 cut(s)	166, 774
BmrFI	CCNGG	6 cut(s)	161, 286, 420, 443, 661, 796
BmsI	GCATC	6 cut(s)	123, 346, 405, 533, 721, 1029
BpiI	GAAGAC	2 cut(s)	223, 473
BpmI	CTGGAG	2 cut(s)	143, 425
BpuEI	CTTGAG	3 cut(s)	113, 234, 609
BpuMI	CCSGG	2 cut(s)	420, 796
BsaBI	GATNNNNATC	2 cut(s)	146, 428
BsaHI	GRCGYC	2 cut(s)	300, 675
BsaI	GGTCTC	2 cut(s)	77, 524
BsaJI	CCNNGG	4 cut(s)	137, 160, 419, 442
Bsc4I	CCNNNNNNNGG	8 cut(s)	86, 143, 160, 394, 425, 442, 448, 769
Bse1I	ACTGG	1 cut(s)	23
Bse8I	GATNNNNATC	2 cut(s)	146, 428
BseBI	CCWGG	4 cut(s)	161, 286, 443, 661
BseDI	CCNNGG	4 cut(s)	137, 160, 419, 442
BseGI	GGATG	4 cut(s)	115, 147, 429, 1044
BseJI	GATNNNNATC	2 cut(s)	146, 428
BseLI	CCNNNNNNNGG	8 cut(s)	86, 143, 160, 394, 425, 442, 448, 769
BseMII	CTCAG	3 cut(s)	88, 519, 999
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	5 cut(s)	217, 266, 467, 541, 641
BseSI	GKGCMC	1 cut(s)	864
BseXI	GCAGC	3 cut(s)	172, 320, 695
Bsh1236I	CGCG	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	419, 795
BslI	CCNNNNNNNGG	8 cut(s)	86, 143, 160, 394, 425, 442, 448, 769
BsmAI	GTCTC	2 cut(s)	77, 524
BsmI	GAATGC	1 cut(s)	503
Bso31I	GGTCTC	2 cut(s)	77, 524
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	3 cut(s)	239, 614, 1002
BspACI	CCGC	8 cut(s)	17, 20, 199, 246, 315, 449, 621, 1042
BspCNI	CTCAG	3 cut(s)	87, 520, 998
BspFNI	CGCG	1 cut(s)	449
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	2 cut(s)	166, 774
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	2 cut(s)	77, 524
BsrBI	CCGCTC	3 cut(s)	248, 317, 623
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	4 cut(s)	137, 160, 419, 442
BssMI	GATC	3 cut(s)	239, 614, 1002
BssNI	GRCGYC	2 cut(s)	300, 675
Bst2UI	CCWGG	4 cut(s)	161, 286, 443, 661
Bst4CI	ACNGT	4 cut(s)	222, 472, 787, 812
Bst6I	CTCTTC	1 cut(s)	559
BstACI	GRCGYC	2 cut(s)	300, 675
BstDEI	CTNAG	4 cut(s)	64, 74, 528, 985
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstF5I	GGATG	4 cut(s)	115, 147, 429, 1044
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	3 cut(s)	242, 617, 1005
BstMAI	GTCTC	2 cut(s)	77, 524
BstMBI	GATC	3 cut(s)	239, 614, 1002
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	4 cut(s)	161, 286, 443, 661
BstSCI	CCNGG	6 cut(s)	159, 284, 418, 441, 659, 794
BstSFI	CTRYAG	2 cut(s)	519, 882
BstSLI	GKGCMC	1 cut(s)	864
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	3 cut(s)	172, 320, 695
BstV2I	GAAGAC	2 cut(s)	223, 473
BtgZI	GCGATG	1 cut(s)	800
BtsCI	GGATG	4 cut(s)	115, 147, 429, 1044
BtsI	GCAGTG	1 cut(s)	951
BtsIMutI	CAGTG	3 cut(s)	32, 783, 951
CciI	TCATGA	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	3 cut(s)	262, 515, 637
CsiI	ACCWGGT	2 cut(s)	284, 659
CviAII	CATG	6 cut(s)	334, 349, 709, 724, 995, 1006
DdeI	CTNAG	4 cut(s)	64, 74, 528, 985
DpnI	GATC	3 cut(s)	241, 616, 1004
DpnII	GATC	3 cut(s)	239, 614, 1002
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
EciI	GGCGGA	2 cut(s)	6, 214
Eco31I	GGTCTC	2 cut(s)	77, 524
Eco47I	GGWCC	3 cut(s)	262, 515, 637
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	159, 284, 441, 659
FaeI	CATG	6 cut(s)	337, 352, 712, 727, 998, 1009
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FatI	CATG	6 cut(s)	333, 348, 708, 723, 994, 1005
FbaI	TGATCA	1 cut(s)	1002
FblI	GTMKAC	2 cut(s)	303, 678
Fnu4HI	GCNGC	5 cut(s)	20, 186, 246, 309, 684
FokI	GGATG	3 cut(s)	122, 154, 436
Fsp4HI	GCNGC	5 cut(s)	20, 186, 246, 309, 684
FspBI	CTAG	1 cut(s)	888
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	5 cut(s)	20, 186, 246, 309, 684
GsuI	CTGGAG	2 cut(s)	143, 425
HapII	CCGG	2 cut(s)	419, 795
HhaI	GCGC	1 cut(s)	449
Hin1I	GRCGYC	2 cut(s)	300, 675
Hin1II	CATG	6 cut(s)	337, 352, 712, 727, 998, 1009
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	3 cut(s)	485, 597, 950
HinfI	GANTC	2 cut(s)	147, 429
HpaII	CCGG	2 cut(s)	419, 795
HphI	GGTGA	2 cut(s)	377, 752
Hpy166II	GTNNAC	4 cut(s)	265, 304, 640, 679
Hpy188I	TCNGA	6 cut(s)	77, 239, 529, 614, 988, 1038
Hpy188III	TCNNGA	5 cut(s)	92, 322, 697, 841, 1006
Hpy8I	GTNNAC	4 cut(s)	265, 304, 640, 679
Hpy99I	CGWCG	4 cut(s)	302, 377, 677, 752
HpyAV	CCTTC	3 cut(s)	62, 80, 189
HpyCH4III	ACNGT	4 cut(s)	222, 472, 787, 812
HpyCH4IV	ACGT	4 cut(s)	300, 366, 675, 741
HpyCH4V	TGCA	5 cut(s)	188, 359, 734, 805, 994
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	4 cut(s)	64, 74, 528, 985
HpySE526I	ACGT	4 cut(s)	300, 366, 675, 741
Hsp92I	GRCGYC	2 cut(s)	300, 675
Hsp92II	CATG	6 cut(s)	337, 352, 712, 727, 998, 1009
HspAI	GCGC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	3 cut(s)	239, 614, 1002
LmnI	GCTCC	6 cut(s)	13, 162, 240, 444, 615, 778
Lsp1109I	GCAGC	3 cut(s)	172, 320, 695
LweI	GCATC	6 cut(s)	123, 346, 405, 533, 721, 1029
MabI	ACCWGGT	2 cut(s)	284, 659
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	4 cut(s)	300, 366, 675, 741
MaeIII	GTNAC	3 cut(s)	25, 877, 905
MalI	GATC	3 cut(s)	241, 616, 1004
MbiI	CCGCTC	3 cut(s)	248, 317, 623
MboI	GATC	3 cut(s)	239, 614, 1002
MboII	GAAGA	9 cut(s)	219, 228, 283, 365, 469, 478, 546, 658, 740
MhlI	GDGCHC	1 cut(s)	864
MluCI	AATT	4 cut(s)	102, 572, 871, 930
MmeI	TCCRAC	1 cut(s)	1009
MspI	CCGG	2 cut(s)	419, 795
MspR9I	CCNGG	6 cut(s)	161, 286, 420, 443, 661, 796
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	4 cut(s)	161, 286, 443, 661
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	2 cut(s)	420, 796
NdeII	GATC	3 cut(s)	239, 614, 1002
NlaIII	CATG	6 cut(s)	337, 352, 712, 727, 998, 1009
NlaIV	GGNNCC	2 cut(s)	166, 774
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	905
PagI	TCATGA	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	2 cut(s)	372, 747
PctI	GAATGC	1 cut(s)	503
PfeI	GAWTC	2 cut(s)	147, 429
PkrI	GCNGC	5 cut(s)	21, 187, 247, 310, 685
PpuMI	RGGWCCY	1 cut(s)	515
Psp5II	RGGWCCY	1 cut(s)	515
Psp6I	CCWGG	4 cut(s)	159, 284, 441, 659
PspGI	CCWGG	4 cut(s)	159, 284, 441, 659
PspN4I	GGNNCC	2 cut(s)	166, 774
PspPI	GGNCC	3 cut(s)	262, 515, 637
PspPPI	RGGWCCY	1 cut(s)	515
SatI	GCNGC	5 cut(s)	20, 186, 246, 309, 684
Sau3AI	GATC	3 cut(s)	239, 614, 1002
Sau96I	GGNCC	3 cut(s)	262, 515, 637
ScrFI	CCNGG	6 cut(s)	161, 286, 420, 443, 661, 796
SduI	GDGCHC	1 cut(s)	864
SexAI	ACCWGGT	2 cut(s)	284, 659
SfaNI	GCATC	6 cut(s)	123, 346, 405, 533, 721, 1029
SfcI	CTRYAG	2 cut(s)	519, 882
SinI	GGWCC	3 cut(s)	262, 515, 637
SmlI	CTYRAG	3 cut(s)	92, 249, 624
SmoI	CTYRAG	3 cut(s)	92, 249, 624
Sse9I	AATT	4 cut(s)	102, 572, 871, 930
SsiI	CCGC	8 cut(s)	17, 20, 199, 246, 315, 449, 621, 1042
SspMI	CTAG	1 cut(s)	888
StyD4I	CCNGG	6 cut(s)	159, 284, 418, 441, 659, 794
TaaI	ACNGT	4 cut(s)	222, 472, 787, 812
TaiI	ACGT	4 cut(s)	303, 369, 678, 744
TaqI	TCGA	4 cut(s)	150, 372, 432, 747
TasI	AATT	4 cut(s)	102, 572, 871, 930
TauI	GCSGC	2 cut(s)	22, 248
TfiI	GAWTC	2 cut(s)	147, 429
TscAI	CASTG	3 cut(s)	39, 790, 951
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	3 cut(s)	185, 308, 683
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	5 cut(s)	126, 350, 496, 725, 1022
TspRI	CASTG	3 cut(s)	39, 790, 951
VpaK11BI	GGWCC	3 cut(s)	262, 515, 637
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	2 cut(s)	572, 871
XmiI	GTMKAC	2 cut(s)	303, 678
XspI	CTAG	1 cut(s)	888
ZraI	GACGTC	2 cut(s)	301, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.