Rmu_sc0000533.1_g000066

BT1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000533.1
N/A
Physical Location & Seq
Reverse (-)
229556 .. 231897
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
atgattgaatggctgaagagactaagagctgcatttggagcctcgtttctctggctcgtttgcctcatttacttcacccagggttttagatcctttgtttggactgcagtttcttaccagctgaaagatactctaaagttgtcaccttcgtcttcccagtttttgttttcgatagccttcttcccatggagcattaaaccattatatggaattttatctgattgtattccaataaaaggaaggaaaagggttccatacttggtgattgcaactgtgctctctcttgtcccatggcctattctcggactgaatgcaacgtcgaggagttccatgtggctccttatgaccttcttaacagtccagaacctgggctcggccatggctgatgtagtagttgatgcgatgattgctgaggcagtaagacatgagcggtttatgccattcctgatcttatctggacaactttgccctcctggaattgagggcactctctttgccctttttatgtcgataaataatttagggtcaacgttggggtcatttgtcggtgctggattggcttcacttttgagcatctcttcaggttcttttgacaaccttctattgggaattgtcgttcaagttctctgcatattcattccaattgctttcctatttttgataccgaaggaagctacaggaatatcagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BT1

Protein Analysis

230

Amino Acids

25.23

Weight (kDa)

9.21

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 25 - 223 3.7e-11 Major Facilitator Superfamily
BT1 PF03092 27 - 143 1.6e-27 BT1 family
BT1 PF03092 144 - 224 4.2e-23 BT1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 206, 367
AccBSI CCGCTC 1 cut(s) 430
AciI CCGC 1 cut(s) 430
AclI AACGTT 1 cut(s) 530
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 375
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 2 cut(s) 35, 564
AfiI CCNNNNNNNGG 7 cut(s) 99, 206, 236, 302, 367, 373, 604
AgsI TTSAA 2 cut(s) 8, 620
AjnI CCWGG 3 cut(s) 78, 366, 472
AloI GAACNNNNNNTCC 2 cut(s) 600, 632
AluBI AGCT 3 cut(s) 29, 121, 674
AluI AGCT 3 cut(s) 29, 121, 674
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 367
AoxI GGCC 2 cut(s) 293, 375
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 67, 135, 274
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 16
BciT130I CCWGG 3 cut(s) 80, 368, 474
BcoDI GTCTC 1 cut(s) 13
BfmI CTRYAG 2 cut(s) 105, 675
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 80, 368, 474
BmiI GGNNCC 3 cut(s) 40, 252, 338
BmrFI CCNGG 3 cut(s) 80, 368, 474
BmrI ACTGGG 1 cut(s) 151
BmsI GCATC 2 cut(s) 388, 582
BmuI ACTGGG 1 cut(s) 151
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 411
BsaJI CCNNGG 6 cut(s) 78, 79, 185, 290, 367, 378
Bsc4I CCNNNNNNNGG 7 cut(s) 99, 206, 236, 302, 367, 373, 604
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 3 cut(s) 80, 368, 474
BseDI CCNNGG 6 cut(s) 78, 79, 185, 290, 367, 378
BseLI CCNNNNNNNGG 7 cut(s) 99, 206, 236, 302, 367, 373, 604
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 337
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 295, 377
BsiHKAI GWGCWC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 7 cut(s) 99, 206, 236, 302, 367, 373, 604
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 272
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 295, 377
Bsp1286I GDGCHC 3 cut(s) 279, 374, 488
Bsp143I GATC 2 cut(s) 89, 447
Bsp19I CCATGG 3 cut(s) 185, 290, 378
BspACI CCGC 1 cut(s) 430
BspANI GGCC 2 cut(s) 295, 377
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 40, 252, 338
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 430
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 6 cut(s) 78, 79, 185, 290, 367, 378
BssMI GATC 2 cut(s) 89, 447
BssT1I CCWWGG 3 cut(s) 185, 290, 378
Bst2UI CCWGG 3 cut(s) 80, 368, 474
Bst4CI ACNGT 2 cut(s) 274, 358
Bst6I CTCTTC 2 cut(s) 11, 583
BstDEI CTNAG 2 cut(s) 23, 411
BstDSI CCRYGG 3 cut(s) 185, 290, 378
BstKTI GATC 2 cut(s) 92, 450
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 89, 447
BstMWI GCNNNNNNNGC 4 cut(s) 38, 407, 436, 557
BstNI CCWGG 3 cut(s) 80, 368, 474
BstSCI CCNGG 3 cut(s) 78, 366, 472
BstSFI CTRYAG 2 cut(s) 105, 675
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BsuRI GGCC 2 cut(s) 295, 377
BtgI CCRYGG 3 cut(s) 185, 290, 378
BtgZI GCGATG 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 367
CviAII CATG 5 cut(s) 186, 291, 331, 379, 425
DdeI CTNAG 2 cut(s) 23, 411
DpnI GATC 2 cut(s) 91, 449
DpnII GATC 2 cut(s) 89, 447
EaeI YGGCCR 1 cut(s) 375
Eam1104I CTCTTC 2 cut(s) 11, 583
EarI CTCTTC 2 cut(s) 11, 583
Eco130I CCWWGG 3 cut(s) 185, 290, 378
Eco24I GRGCYC 1 cut(s) 374
Eco57I CTGAAG 2 cut(s) 35, 564
EcoRII CCWGG 3 cut(s) 78, 366, 472
EcoT14I CCWWGG 3 cut(s) 185, 290, 378
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 3 cut(s) 185, 290, 378
FaeI CATG 5 cut(s) 189, 294, 334, 382, 428
FaqI GGGAC 1 cut(s) 272
FatI CATG 5 cut(s) 185, 290, 330, 378, 424
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 295, 377
Hin1II CATG 5 cut(s) 189, 294, 334, 382, 428
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HphI GGTGA 3 cut(s) 67, 135, 274
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 2 cut(s) 220, 305
Hpy188III TCNNGA 3 cut(s) 361, 445, 456
Hpy8I GTNNAC 1 cut(s) 528
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 6 cut(s) 156, 187, 234, 358, 608, 661
HpyCH4III ACNGT 2 cut(s) 274, 358
HpyCH4IV ACGT 2 cut(s) 317, 530
HpyCH4V TGCA 5 cut(s) 32, 107, 269, 314, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 407, 436, 557
HpyF3I CTNAG 2 cut(s) 23, 411
HpySE526I ACGT 2 cut(s) 317, 530
Hsp92II CATG 5 cut(s) 189, 294, 334, 382, 428
Kzo9I GATC 2 cut(s) 89, 447
LmnI GCTCC 3 cut(s) 38, 189, 342
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 388, 582
MaeII ACGT 2 cut(s) 317, 530
MaeIII GTNAC 1 cut(s) 141
MalI GATC 2 cut(s) 91, 449
MbiI CCGCTC 1 cut(s) 430
MboI GATC 2 cut(s) 89, 447
MboII GAAGA 4 cut(s) 28, 144, 172, 570
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 1 cut(s) 89
MhlI GDGCHC 3 cut(s) 279, 374, 488
MluCI AATT 5 cut(s) 210, 477, 517, 609, 642
MnlI CCTC 6 cut(s) 52, 74, 315, 406, 475, 480
MseI TTAA 2 cut(s) 195, 353
MspA1I CMGCKG 1 cut(s) 121
MspR9I CCNGG 3 cut(s) 80, 368, 474
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 3 cut(s) 80, 368, 474
MwoI GCNNNNNNNGC 4 cut(s) 38, 407, 436, 557
NcoI CCATGG 3 cut(s) 185, 290, 378
NdeII GATC 2 cut(s) 89, 447
NlaIII CATG 5 cut(s) 189, 294, 334, 382, 428
NlaIV GGNNCC 3 cut(s) 40, 252, 338
NmeAIII GCCGAG 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 141
PasI CCCWGGG 1 cut(s) 79
PctI GAATGC 1 cut(s) 316
PflMI CCANNNNNTGG 2 cut(s) 206, 367
PfoI TCCNGGA 1 cut(s) 472
PkrI GCNGC 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 530
Psp6I CCWGG 3 cut(s) 78, 366, 472
PspGI CCWGG 3 cut(s) 78, 366, 472
PspN4I GGNNCC 3 cut(s) 40, 252, 338
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 367
PsuI RGATCY 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 121
SaqAI TTAA 2 cut(s) 195, 353
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 89, 447
ScrFI CCNGG 3 cut(s) 80, 368, 474
SduI GDGCHC 3 cut(s) 279, 374, 488
SfaNI GCATC 2 cut(s) 388, 582
SfcI CTRYAG 2 cut(s) 105, 675
Sse9I AATT 5 cut(s) 210, 477, 517, 609, 642
SsiI CCGC 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 78, 366, 472
StyI CCWWGG 3 cut(s) 185, 290, 378
TaaI ACNGT 2 cut(s) 274, 358
TaiI ACGT 2 cut(s) 320, 533
TaqI TCGA 3 cut(s) 170, 320, 509
TasI AATT 5 cut(s) 210, 477, 517, 609, 642
Tru1I TTAA 2 cut(s) 195, 353
Tru9I TTAA 2 cut(s) 195, 353
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 625
Van91I CCANNNNNTGG 2 cut(s) 206, 367
XapI RAATTY 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.