Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000533.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

237266 .. 238783

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

atgcatatgcatgcagagagcatgcttgatgatcccagcactaggctccttaatgataaacccaaaaacaaatggcgtattgctgtttccaccatcttctgcattcgagccctcctctctttactcaaccaaatcacaaaaaccaacttcataacatctagctctccggtctcttccaatagtactttcaatgtggaccaaatagctctcactcggcttgtgaagaacaaagatcctgctcaactgcaagagttgggaggggttgaaggagtagcattacatctcaaatctgataaagagcatggaattccttgccatgatgctgaggacattcccgacagaatcaaagaattcggttcaaacgtttacataaaagcccccaaaggaggttttttccgttttgtgtgggaagccttcaaagacccaacagtactcatcctcttaggctgtgcggcactttctcttggttttggcatcaatgaacatggattcaaagaaggttatactaatggtggaaccatattgctcgcagtcattcaaatcatttccgtgtctgcagtaagcgattacaggcagagcagacctttggtgcgtaacaatatccaaattgaggcgtggagaggtggcaggaggcaaaagatttctgtttatgaaactgtggttggggatgtaattctcttgaatattggagatcgggtgccggctgatggattacttgtacaaggccattccttgcaagtagacgaatcaagcatgacaggaaccgatagccctgttgaaattagccaccatcagaatcccttccttttttctgggacaaaaatcacacatggatatggtcgaatgcttgtcacatccgttgggatgaacacaacgtggggtgagatgatgagccaaatgaggcaagactccagtgaaaggacacccctgcaagaacgtctggagaagctaaattcgttaataggtaaagtagctttgctagttgctttccttcttcttgtagtcttgttagttcgatacttcactgggaataccaaggatgagaatggaaacaaggagttcaatggcagcaacacagaagtagatgacataataagcgcagtcattgggattgtagcggctgcggtttccattgttgtggtggtaattccagaaggtctctcattagcactaattcttgctgttgcctattccaagaagataatgatggctgacaaagcaatggatctgaagctctctgcttgtgagacaatgggatctgttaccacaatttgcactgacaaaacaggtactcttactatgaaccagatggaggtgacccagttttggttaggtaaatattctttggaagaagaggcttattcatcagagatttctccttctgttcttcatttgatccaagaaggagttgctctgaatacaactggtagtgtgcacaagcaaagtttggattcaaaagtagaaatctcaggcagtccaactgaaaaggctattatttcatggggggtatatatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

505

Amino Acids

55.22

Weight (kDa)

5.88

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	85 - 154	2.6e-13	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	206 - 300	2.2e-20	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	697
AccI	GTMKAC	1 cut(s)	741
AciI	CCGC	3 cut(s)	452, 1118, 1124
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	5 cut(s)	26, 227, 1233, 1264, 1390
AcsI	RAATTY	3 cut(s)	306, 350, 952
AcuI	CTGAAG	1 cut(s)	1250
AdeI	CACNNNGTG	1 cut(s)	876
AfaI	GTAC	4 cut(s)	184, 432, 720, 1291
AfiI	CCNNNNNNNGG	7 cut(s)	42, 386, 610, 707, 918, 1312, 1326
AjuI	GAANNNNNNNTTGG	4 cut(s)	170, 202, 645, 677
AluBI	AGCT	5 cut(s)	162, 206, 949, 974, 1234
AluI	AGCT	5 cut(s)	162, 206, 949, 974, 1234
Alw21I	GWGCWC	1 cut(s)	1437
Alw26I	GTCTC	3 cut(s)	175, 1163, 1241
Alw44I	GTGCAC	1 cut(s)	1433
AlwI	GGATC	5 cut(s)	26, 227, 1233, 1264, 1390
AoxI	GGCC	1 cut(s)	724
ApaLI	GTGCAC	1 cut(s)	1433
ApeKI	GCWGC	2 cut(s)	1068, 1121
ApoI	RAATTY	3 cut(s)	306, 350, 952
Asp700I	GAANNNNTTC	1 cut(s)	800
AspLEI	GCGC	1 cut(s)	1100
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	893, 1327
AvaII	GGWCC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	1437
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	1437
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	1080, 1108
BccI	CCATC	5 cut(s)	101, 701, 798, 1201, 1303
BcoDI	GTCTC	3 cut(s)	175, 1163, 1241
BfaI	CTAG	3 cut(s)	42, 159, 980
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	4 cut(s)	453, 1069, 1119, 1122
BlsI	GCNGC	4 cut(s)	454, 1070, 1120, 1123
BmcAI	AGTACT	2 cut(s)	184, 432
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	4 cut(s)	47, 517, 699, 763
BmrI	ACTGGG	2 cut(s)	1035, 1315
BmsI	GCATC	2 cut(s)	310, 483
BmuI	ACTGGG	2 cut(s)	1035, 1315
BplI	GAGNNNNNCTC	2 cut(s)	99, 131
BpmI	CTGGAG	2 cut(s)	895, 962
Bpu10I	CCTNAGC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	175, 1163
BsaJI	CCNNGG	1 cut(s)	1035
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	7 cut(s)	42, 386, 610, 707, 918, 1312, 1326
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	4 cut(s)	912, 1030, 1321, 1429
Bse3DI	GCAATG	1 cut(s)	1227
BseDI	CCNNGG	1 cut(s)	1035
BseGI	GGATG	5 cut(s)	435, 673, 854, 870, 1045
BseLI	CCNNNNNNNGG	7 cut(s)	42, 386, 610, 707, 918, 1312, 1326
BseMI	GCAATG	1 cut(s)	1227
BseMII	CTCAG	2 cut(s)	315, 1482
BseNI	ACTGG	4 cut(s)	912, 1030, 1321, 1429
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	1437
BseXI	GCAGC	2 cut(s)	1080, 1108
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	726
BshNI	GGYRCC	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	1437
BsiSI	CCGG	2 cut(s)	167, 701
BslFI	GGGAC	1 cut(s)	829
BslI	CCNNNNNNNGG	7 cut(s)	42, 386, 610, 707, 918, 1312, 1326
BsmAI	GTCTC	3 cut(s)	175, 1163, 1241
BsmFI	GGGAC	1 cut(s)	829
BsmI	GAATGC	2 cut(s)	102, 849
BsnI	GGCC	1 cut(s)	726
Bso31I	GGTCTC	2 cut(s)	175, 1163
Bsp1286I	GDGCHC	2 cut(s)	112, 1437
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
BspACI	CCGC	3 cut(s)	452, 1118, 1124
BspANI	GGCC	1 cut(s)	726
BspCNI	CTCAG	2 cut(s)	316, 1481
BspLI	GGNNCC	4 cut(s)	47, 517, 699, 763
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	5 cut(s)	26, 227, 1233, 1264, 1390
BspT107I	GGYRCC	1 cut(s)	697
BspTNI	GGTCTC	2 cut(s)	175, 1163
BsrDI	GCAATG	1 cut(s)	1227
BsrFI	RCCGGY	1 cut(s)	700
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	4 cut(s)	912, 1030, 1321, 1429
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	1035
BssMI	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
BssT1I	CCWWGG	1 cut(s)	1035
Bst4CI	ACNGT	2 cut(s)	430, 658
Bst6I	CTCTTC	2 cut(s)	178, 1347
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	4 cut(s)	12, 23, 528, 702
BstDEI	CTNAG	3 cut(s)	324, 442, 1468
BstEII	GGTNACC	1 cut(s)	1315
BstF5I	GGATG	5 cut(s)	435, 673, 854, 870, 1045
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	6 cut(s)	34, 235, 694, 1228, 1259, 1398
BstMAI	GTCTC	3 cut(s)	175, 1163, 1241
BstMBI	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
BstMWI	GCNNNNNNNGC	1 cut(s)	1217
BstNSI	RCATGY	2 cut(s)	14, 25
BstPI	GGTNACC	1 cut(s)	1315
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	1 cut(s)	1437
BstV1I	GCAGC	2 cut(s)	1080, 1108
BstX2I	RGATCY	3 cut(s)	232, 1225, 1256
BstXI	CCANNNNNNTGG	1 cut(s)	1138
BstYI	RGATCY	3 cut(s)	232, 1225, 1256
BsuRI	GGCC	1 cut(s)	726
BtsCI	GGATG	5 cut(s)	435, 673, 854, 870, 1045
BtsIMutI	CAGTG	3 cut(s)	919, 1023, 1275
Cac8I	GCNNGC	4 cut(s)	12, 23, 528, 702
CfoI	GCGC	1 cut(s)	1100
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	4 cut(s)	183, 431, 719, 1290
CviAII	CATG	8 cut(s)	11, 22, 302, 317, 485, 754, 830, 1500
CviQI	GTAC	4 cut(s)	183, 431, 719, 1290
DdeI	CTNAG	3 cut(s)	324, 442, 1468
DpnI	GATC	6 cut(s)	33, 234, 693, 1227, 1258, 1397
DpnII	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
DraIII	CACNNNGTG	1 cut(s)	876
Eam1104I	CTCTTC	2 cut(s)	178, 1347
EarI	CTCTTC	2 cut(s)	178, 1347
Eco130I	CCWWGG	1 cut(s)	1035
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	2 cut(s)	175, 1163
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	1250
Eco91I	GGTNACC	1 cut(s)	1315
EcoO65I	GGTNACC	1 cut(s)	1315
EcoRI	GAATTC	2 cut(s)	306, 350
EcoT14I	CCWWGG	1 cut(s)	1035
EcoT22I	ATGCAT	2 cut(s)	6, 12
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	1035
FaeI	CATG	8 cut(s)	14, 25, 305, 320, 488, 757, 833, 1503
FaqI	GGGAC	1 cut(s)	829
FatI	CATG	8 cut(s)	10, 21, 301, 316, 484, 753, 829, 1499
FauNDI	CATATG	1 cut(s)	6
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	4 cut(s)	453, 1069, 1119, 1122
FokI	GGATG	5 cut(s)	422, 680, 841, 877, 1052
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	4 cut(s)	453, 1069, 1119, 1122
FspBI	CTAG	3 cut(s)	42, 159, 980
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	4 cut(s)	453, 1069, 1119, 1122
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	895, 962
HaeIII	GGCC	1 cut(s)	726
HapII	CCGG	2 cut(s)	167, 701
HhaI	GCGC	1 cut(s)	1100
Hin1II	CATG	8 cut(s)	14, 25, 305, 320, 488, 757, 833, 1503
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HinfI	GANTC	6 cut(s)	342, 489, 746, 796, 908, 1451
HpaII	CCGG	2 cut(s)	167, 701
HphI	GGTGA	2 cut(s)	893, 1327
Hpy166II	GTNNAC	4 cut(s)	196, 367, 742, 1435
Hpy188I	TCNGA	5 cut(s)	292, 795, 1230, 1369, 1416
Hpy188III	TCNNGA	4 cut(s)	335, 679, 941, 1151
Hpy8I	GTNNAC	4 cut(s)	196, 367, 742, 1435
HpyAV	CCTTC	8 cut(s)	260, 424, 491, 811, 1001, 1148, 1389, 1397
HpyCH4III	ACNGT	2 cut(s)	430, 658
HpyCH4IV	ACGT	3 cut(s)	363, 875, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1217
HpyF3I	CTNAG	3 cut(s)	324, 442, 1468
HpySE526I	ACGT	3 cut(s)	363, 875, 937
Hsp92II	CATG	8 cut(s)	14, 25, 305, 320, 488, 757, 833, 1503
HspAI	GCGC	1 cut(s)	1098
KroI	GCCGGC	1 cut(s)	700
KroNI	GCCGGC	1 cut(s)	702
Kzo9I	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
LmnI	GCTCC	1 cut(s)	51
Lsp1109I	GCAGC	2 cut(s)	1080, 1108
LweI	GCATC	2 cut(s)	310, 483
MaeI	CTAG	3 cut(s)	42, 159, 980
MaeII	ACGT	3 cut(s)	363, 875, 937
MaeIII	GTNAC	4 cut(s)	593, 850, 1261, 1315
MalI	GATC	6 cut(s)	33, 234, 693, 1227, 1258, 1397
MboI	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
MboII	GAAGA	8 cut(s)	88, 165, 235, 986, 1210, 1361, 1364, 1379
MflI	RGATCY	3 cut(s)	232, 1225, 1256
MhlI	GDGCHC	2 cut(s)	112, 1437
MluCI	AATT	9 cut(s)	306, 350, 606, 672, 780, 952, 1146, 1173, 1269
MlyI	GAGTC	1 cut(s)	902
MmeI	TCCRAC	1 cut(s)	1502
Mph1103I	ATGCAT	2 cut(s)	6, 12
MroNI	GCCGGC	1 cut(s)	700
MroXI	GAANNNNTTC	1 cut(s)	800
MseI	TTAA	3 cut(s)	51, 959, 1516
MslI	CAYNNNNRTG	4 cut(s)	9, 548, 834, 1136
MspI	CCGG	2 cut(s)	167, 701
Mva1269I	GAATGC	2 cut(s)	102, 849
MwoI	GCNNNNNNNGC	1 cut(s)	1217
NaeI	GCCGGC	1 cut(s)	702
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
NgoMIV	GCCGGC	1 cut(s)	700
NlaIII	CATG	8 cut(s)	14, 25, 305, 320, 488, 757, 833, 1503
NlaIV	GGNNCC	4 cut(s)	47, 517, 699, 763
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	850, 1315
NsiI	ATGCAT	2 cut(s)	6, 12
NspI	RCATGY	2 cut(s)	14, 25
PaeI	GCATGC	2 cut(s)	14, 25
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	2 cut(s)	102, 849
PdiI	GCCGGC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	800
PfeI	GAWTC	5 cut(s)	342, 489, 746, 796, 1451
PkrI	GCNGC	4 cut(s)	454, 1070, 1120, 1123
PleI	GAGTC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	902
Psp1406I	AACGTT	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	1315
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	47, 517, 699, 763
PspPI	GGNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	3 cut(s)	232, 1225, 1256
RsaI	GTAC	4 cut(s)	184, 432, 720, 1291
RsaNI	GTAC	4 cut(s)	183, 431, 719, 1290
RseI	CAYNNNNRTG	4 cut(s)	9, 548, 834, 1136
SaqAI	TTAA	3 cut(s)	51, 959, 1516
SatI	GCNGC	4 cut(s)	453, 1069, 1119, 1122
Sau3AI	GATC	6 cut(s)	31, 232, 691, 1225, 1256, 1395
Sau96I	GGNCC	1 cut(s)	196
ScaI	AGTACT	2 cut(s)	184, 432
SchI	GAGTC	1 cut(s)	902
SduI	GDGCHC	2 cut(s)	112, 1437
SfaNI	GCATC	2 cut(s)	310, 483
SfcI	CTRYAG	1 cut(s)	555
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	4 cut(s)	9, 548, 834, 1136
SphI	GCATGC	2 cut(s)	14, 25
Sse9I	AATT	9 cut(s)	306, 350, 606, 672, 780, 952, 1146, 1173, 1269
SsiI	CCGC	3 cut(s)	452, 1118, 1124
SspI	AATATT	2 cut(s)	685, 1340
SspMI	CTAG	3 cut(s)	42, 159, 980
StyI	CCWWGG	1 cut(s)	1035
TaaI	ACNGT	2 cut(s)	430, 658
TaiI	ACGT	3 cut(s)	366, 878, 940
TaqI	TCGA	3 cut(s)	106, 841, 1015
TasI	AATT	9 cut(s)	306, 350, 606, 672, 780, 952, 1146, 1173, 1269
TatI	WGTACW	3 cut(s)	182, 430, 718
TauI	GCSGC	2 cut(s)	455, 1121
TfiI	GAWTC	5 cut(s)	342, 489, 746, 796, 1451
Tru1I	TTAA	3 cut(s)	51, 959, 1516
Tru9I	TTAA	3 cut(s)	51, 959, 1516
TscAI	CASTG	3 cut(s)	919, 1030, 1282
TseFI	GTSAC	2 cut(s)	850, 1315
TseI	GCWGC	2 cut(s)	1068, 1121
Tsp45I	GTSAC	2 cut(s)	850, 1315
TspDTI	ATGAA	8 cut(s)	139, 495, 666, 881, 1316, 1353, 1379, 1488
TspGWI	ACGGA	3 cut(s)	386, 538, 847
TspRI	CASTG	3 cut(s)	919, 1030, 1282
VneI	GTGCAC	1 cut(s)	1433
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	3 cut(s)	306, 350, 952
XceI	RCATGY	2 cut(s)	14, 25
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1138
XmiI	GTMKAC	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	800
XspI	CTAG	3 cut(s)	42, 159, 980
ZrmI	AGTACT	2 cut(s)	184, 432
Zsp2I	ATGCAT	2 cut(s)	6, 12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.