Rmu_sc0000538.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000538.1
N/A
Physical Location & Seq
Reverse (-)
30433 .. 32667
2235 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atgtggcaagaattgacttccggaaattatctgaactcccacgatcatagtcatcaggggcaggcgcagacatcagggggagatgtctacatgttcacctcgaatcgtgaaggcctacgctgggagtaccttcagttgaagacacccaaagcactatgggatgcccttaaaggacgttttgggaacattcatgatactttgctcccaggactggctgttcagtggaatggaatctgcttgcttgactataaaaaggtcaatgacttcaacaaggacatgttgcgcttaaaggcatgtctcaatttctgtggaaaggaaatcacagaagatgatatgatccagaagactctttccacttttcctacttcagcaatcatactagcgaaccagtataagctggagtatgataacaaaagaggattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

141

Amino Acids

16.21

Weight (kDa)

6.89

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 20
AclWI GGATC 1 cut(s) 331
AcuI CTGAAG 2 cut(s) 116, 351
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 121, 211
AflIII ACRYGT 2 cut(s) 90, 276
AgsI TTSAA 2 cut(s) 139, 268
AjnI CCWGG 1 cut(s) 205
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 20
AoxI GGCC 1 cut(s) 112
AspLEI GCGC 2 cut(s) 67, 285
AsuHPI GGTGA 1 cut(s) 88
BbsI GAAGAC 2 cut(s) 146, 350
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 302
BfaI CTAG 1 cut(s) 380
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 2 cut(s) 146, 350
BpmI CTGGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 211
Bse1I ACTGG 2 cut(s) 216, 388
BseAI TCCGGA 1 cut(s) 20
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 121, 211
BseNI ACTGG 2 cut(s) 216, 388
BseYI CCCAGC 1 cut(s) 120
BshFI GGCC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 121, 211
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 114
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 2 cut(s) 43, 336
BspANI GGCC 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 20
BspHI TCATGA 1 cut(s) 190
BspPI GGATC 1 cut(s) 331
BsrI ACTGG 2 cut(s) 216, 388
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 2 cut(s) 43, 336
Bst2UI CCWGG 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 63, 239
BstF5I GGATG 1 cut(s) 166
BstHHI GCGC 2 cut(s) 67, 285
BstKTI GATC 2 cut(s) 46, 339
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 43, 336
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 3 cut(s) 94, 280, 297
BstSCI CCNGG 1 cut(s) 205
BstV2I GAAGAC 2 cut(s) 146, 350
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 63, 239
CciI TCATGA 1 cut(s) 190
CfoI GCGC 2 cut(s) 67, 285
Csp6I GTAC 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 91, 191, 277, 294
CviJI RGCY 3 cut(s) 114, 215, 397
CviKI_1 RGCY 3 cut(s) 114, 215, 397
CviQI GTAC 1 cut(s) 127
DpnI GATC 2 cut(s) 45, 338
DpnII GATC 2 cut(s) 43, 336
Eco147I AGGCCT 1 cut(s) 114
Eco57I CTGAAG 2 cut(s) 116, 351
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 4 cut(s) 94, 194, 280, 297
FatI CATG 4 cut(s) 90, 190, 276, 293
FblI GTMKAC 1 cut(s) 87
FokI GGATG 1 cut(s) 173
FspBI CTAG 1 cut(s) 380
GlaI GCGC 2 cut(s) 66, 284
GsaI CCCAGC 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 21
HhaI GCGC 2 cut(s) 67, 285
Hin1II CATG 4 cut(s) 94, 194, 280, 297
Hin6I GCGC 2 cut(s) 65, 283
HinP1I GCGC 2 cut(s) 65, 283
HinfI GANTC 3 cut(s) 103, 231, 346
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 88, 96
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 4 cut(s) 21, 107, 191, 340
Hpy8I GTNNAC 2 cut(s) 88, 96
HpyAV CCTTC 2 cut(s) 104, 140
HpyCH4IV ACGT 1 cut(s) 175
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 4 cut(s) 94, 194, 280, 297
HspAI GCGC 2 cut(s) 65, 283
Kpn2I TCCGGA 1 cut(s) 20
Kzo9I GATC 2 cut(s) 43, 336
LmnI GCTCC 1 cut(s) 207
LweI GCATC 1 cut(s) 151
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 175
MalI GATC 2 cut(s) 45, 338
MboI GATC 2 cut(s) 43, 336
MboII GAAGA 3 cut(s) 151, 338, 355
MluCI AATT 3 cut(s) 11, 25, 301
MlyI GAGTC 1 cut(s) 340
MnlI CCTC 2 cut(s) 109, 410
MroI TCCGGA 1 cut(s) 20
MseI TTAA 2 cut(s) 168, 287
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
NdeII GATC 2 cut(s) 43, 336
NlaIII CATG 4 cut(s) 94, 194, 280, 297
NspI RCATGY 3 cut(s) 94, 280, 297
PagI TCATGA 1 cut(s) 190
PceI AGGCCT 1 cut(s) 114
PciI ACATGT 2 cut(s) 90, 276
PfeI GAWTC 2 cut(s) 103, 231
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PscI ACATGT 2 cut(s) 90, 276
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 120
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 168, 287
Sau3AI GATC 2 cut(s) 43, 336
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 207
SetI ASST 5 cut(s) 101, 132, 178, 258, 399
SfaNI GCATC 1 cut(s) 151
Sse9I AATT 3 cut(s) 11, 25, 301
SseBI AGGCCT 1 cut(s) 114
SspMI CTAG 1 cut(s) 380
StuI AGGCCT 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 205
TaiI ACGT 1 cut(s) 178
TaqI TCGA 1 cut(s) 101
TasI AATT 3 cut(s) 11, 25, 301
TfiI GAWTC 2 cut(s) 103, 231
Tru1I TTAA 2 cut(s) 168, 287
Tru9I TTAA 2 cut(s) 168, 287
TscAI CASTG 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 227
XceI RCATGY 3 cut(s) 94, 280, 297
XmiI GTMKAC 1 cut(s) 87
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.