Rmu_sc0000544.1_g000001

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000544.1
N/A
Physical Location & Seq
Forward (+)
21 .. 354
334 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
atgaagatccccaagtctcttgagaatgtttactcttgtgagaactggttgccaaggagggtgatgagtgcgtggcgtatagcaggaatagtgcatgcattggaaggttggaatgagcacgagtgtggtcacaccatgtccagcattgacaaagtttggcaagcaactcttcgacatggctttcagcctctaatctccaaagaggcaaagattgattag

Protein Analysis

72

Amino Acids

8.33

Weight (kDa)

7.86

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CER1-like_C PF12076 1 - 63 2.6e-34 CER1-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AleI CACNNNNGTG 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 73
BauI CACGAG 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 1 cut(s) 6
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 119
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 96, 162
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Cac8I GCNNGC 2 cut(s) 96, 162
CviAII CATG 3 cut(s) 95, 136, 176
CviJI RGCY 2 cut(s) 180, 187
CviKI_1 RGCY 2 cut(s) 180, 187
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 98, 139, 179
FaiI YATR 4 cut(s) 80, 96, 137, 177
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 3 cut(s) 94, 135, 175
Hin1II CATG 3 cut(s) 98, 139, 179
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 98
HpyCH4V TGCA 2 cut(s) 94, 98
Hsp92II CATG 3 cut(s) 98, 139, 179
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 3 cut(s) 31, 69, 154
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 16, 161
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 51, 196, 198
Mph1103I ATGCAT 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 123
NdeII GATC 1 cut(s) 6
NlaIII CATG 3 cut(s) 98, 139, 179
NmuCI GTSAC 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 98
OliI CACNNNNGTG 1 cut(s) 123
PaeI GCATGC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 123
Sau3AI GATC 1 cut(s) 6
SduI GDGCHC 1 cut(s) 120
SetI ASST 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
SphI GCATGC 1 cut(s) 98
StyI CCWWGG 1 cut(s) 53
TaqI TCGA 1 cut(s) 172
TseFI GTSAC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 98
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.