Rmu_sc0000545.1_g000022

Neurochondrin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000545.1
OG0019894
Physical Location & Seq
Forward (+)
93863 .. 95626
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1764 bp
atggcttcgcagcaagacactcaatctccgccgcttgttcacgactgcttgaaactattgaagtccgagacagacgagcagcgcctcgccggcctcgacctcctcacccaatttcgcaaagccaacgacctctcctctctcctcactattcaccacgccctcggtccccactttctcgatcaactcctccgcaacgacgccgttttacttctctcaatcacaaccctcgccgccttctgccgcgttccccaaatcgccgccgcaaacgacgtcgtctccaagattccacttgtactcaaacttgtctcaacatctcaagaatcagacccaattctcaaagaatgctatgagtttctgtatttggtgtctacagcttccgataagggagccactacattgttcaattctgggggcttcatcaaaatgctggcttctcatataccagttttacccgacggtgttgctattaagcttgtgcaaaatttactaagaacagtggtgtttcttgatatatatgtggcagagctctcagtgattgtggctacattggcaaggcaatttgctatgttgcacaatgctgcgaaattcgatgctctgcatctacttgcgggcattctctcatcaacacatttgaattcagcccggcttcgggactcgcttcggctgctttcggatagaaactggccaaattacatgcgtgatggtgttgtggctattttgcaaaaccatgttggagccaatgagaagctggaggcgcttgttttggctgacgctatggtgtcgattttcggggaggggtggttgataggggagatagataatgtaggggaacttgatgggaagaaagagcctattccctctgacaggtgcttactgcttgttttggagcaatcacgagttgaggttgctgttctgttgaaagcacttgcctatttgaaaaatgaagcaagtaagaattcgaaatcttcaccaactggtgagacagtttgttcaaagaaaaggaatgtggctctgctgttttccttggttgaaaagataattaacttgatgtcgaatgctgttgctagtgagaatgaagaggaagtacttgttgatgaaaatacttgtgtgaagattattggcggcctcaatgagacgattgttgtggttctggaatatttacaggatgcaaaggaacatggagagaggaagggaaatgatcttcttgcttcggtgcggataattggaagatatgttgcagaaactcccattgcatgcgaagacaaggttggagagcttttagggtatatgctttcgacagagggtgaagatgaaccaacaggacccttctactcggtatgctatttgcttccaatgctgtgccaaatgacagtagagattgaaggatgtaaagctttgatttcttgtggaggtcataacactgttgttgactgccttgtaagattgattcgtcaacataatcgttatatgggcgaggataatggacgttgcatctattttgcatggcacaccatcttgaatcttctttcaaacaaagagctagtgccagtgccattggatgacttaactgctgttaatctattaaaagcattggcatattggacagagagcactcatgatgacccctcaattgttatgatggcttcaagaatttgcgcattgctgttggattttacatcgcagaaggctcttcttaagaatcctgacttcgacaataactctcttggtagattgtttcggctgattacaagaagtttggcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neurochondrin

Protein Analysis

587

Amino Acids

64.65

Weight (kDa)

5.36

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neurochondrin PF05536 8 - 570 2e-92 Neurochondrin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019894)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0139901
rosa_laevigata RLG00000019837
rosa_multiflora Rmu_sc0000545.1_g000022
rosa_roxburghii Rroxscaffold_2G00105180
rosa_rugosa Rorug02G0360100
rosa_samantha Rh2BG420400
rosa_wichuraiana Rw2G033360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 1657
AccI GTMKAC 1 cut(s) 368
AccII CGCG 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 683
AcsI RAATTY 5 cut(s) 481, 584, 634, 955, 1650
AcyI GRCGYC 2 cut(s) 198, 270
AfaI GTAC 2 cut(s) 294, 1086
AfiI CCNNNNNNNGG 3 cut(s) 648, 649, 864
AflII CTTAAG 1 cut(s) 1694
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
AluBI AGCT 7 cut(s) 374, 472, 526, 748, 1276, 1394, 1540
AluI AGCT 7 cut(s) 374, 472, 526, 748, 1276, 1394, 1540
Alw21I GWGCWC 2 cut(s) 528, 1613
Alw26I GTCTC 5 cut(s) 62, 280, 310, 974, 1127
AoxI GGCC 3 cut(s) 91, 683, 1123
ApeKI GCWGC 4 cut(s) 10, 79, 578, 664
ApoI RAATTY 5 cut(s) 481, 584, 634, 955, 1650
AspLEI GCGC 3 cut(s) 84, 757, 1658
AspS9I GGNCC 2 cut(s) 164, 1322
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 5 cut(s) 97, 143, 960, 989, 1316
AsuII TTCGAA 1 cut(s) 959
AvaII GGWCC 2 cut(s) 164, 1322
BalI TGGCCA 1 cut(s) 685
BanII GRGCYC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 1068, 1100
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 1266
Bbv12I GWGCWC 2 cut(s) 528, 1613
BbvI GCAGC 4 cut(s) 22, 91, 565, 651
BccI CCATC 4 cut(s) 695, 830, 1520, 1633
BceAI ACGGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 443, 477
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 5 cut(s) 62, 280, 310, 974, 1127
BfaI CTAG 2 cut(s) 1065, 1541
BfmI CTRYAG 1 cut(s) 369
BfoI RGCGCY 2 cut(s) 85, 758
BfrI CTTAAG 1 cut(s) 1694
BglI GCCNNNNNGGC 1 cut(s) 90
BmcAI AGTACT 1 cut(s) 1086
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 2 cut(s) 164, 1322
BmgT120I GGNCC 2 cut(s) 164, 1322
BmiI GGNNCC 4 cut(s) 166, 388, 736, 1324
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 4 cut(s) 580, 607, 1156, 1500
BpiI GAAGAC 1 cut(s) 1266
BpmI CTGGAG 1 cut(s) 770
Bpu14I TTCGAA 1 cut(s) 959
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 643
BsaHI GRCGYC 2 cut(s) 198, 270
BsaJI CCNNGG 2 cut(s) 160, 1023
BsaXI ACNNNNNCTCC 8 cut(s) 10, 40, 116, 146, 260, 290, 785, 815
Bsc4I CCNNNNNNNGG 3 cut(s) 648, 649, 864
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 4 cut(s) 443, 686, 979, 1547
Bse3DI GCAATG 2 cut(s) 1248, 1658
BseDI CCNNGG 2 cut(s) 160, 1023
BseGI GGATG 3 cut(s) 1171, 1391, 1564
BseLI CCNNNNNNNGG 3 cut(s) 648, 649, 864
BseMI GCAATG 2 cut(s) 1248, 1658
BseMII CTCAG 1 cut(s) 543
BseNI ACTGG 4 cut(s) 443, 686, 979, 1547
BseRI GAGGAG 4 cut(s) 92, 124, 131, 176
BseXI GCAGC 4 cut(s) 22, 91, 565, 651
Bsh1236I CGCG 1 cut(s) 243
BshFI GGCC 3 cut(s) 93, 685, 1125
BsiHKAI GWGCWC 2 cut(s) 528, 1613
BsiSI CCGG 2 cut(s) 90, 643
BslFI GGGAC 2 cut(s) 150, 665
BslI CCNNNNNNNGG 3 cut(s) 648, 649, 864
BsmAI GTCTC 5 cut(s) 62, 280, 310, 974, 1127
BsmBI CGTCTC 2 cut(s) 280, 1127
BsmFI GGGAC 2 cut(s) 150, 665
BsmI GAATGC 3 cut(s) 347, 612, 1060
BsnI GGCC 3 cut(s) 93, 685, 1125
Bsp119I TTCGAA 1 cut(s) 959
Bsp1286I GDGCHC 2 cut(s) 528, 1613
Bsp143I GATC 2 cut(s) 178, 1198
BspANI GGCC 3 cut(s) 93, 685, 1125
BspCNI CTCAG 1 cut(s) 542
BspFNI CGCG 1 cut(s) 243
BspHI TCATGA 1 cut(s) 1615
BspLI GGNNCC 4 cut(s) 166, 388, 736, 1324
BspQI GCTCTTC 1 cut(s) 1695
BspT104I TTCGAA 1 cut(s) 959
BspTI CTTAAG 1 cut(s) 1694
BsrDI GCAATG 2 cut(s) 1248, 1658
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 4 cut(s) 443, 686, 979, 1547
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 160, 1023
BssMI GATC 2 cut(s) 178, 1198
BssNI GRCGYC 2 cut(s) 198, 270
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 1 cut(s) 1023
Bst2BI CACGAG 1 cut(s) 894
Bst4CI ACNGT 5 cut(s) 458, 496, 985, 1372, 1423
Bst6I CTCTTC 2 cut(s) 1071, 1695
BstACI GRCGYC 2 cut(s) 198, 270
BstAFI CTTAAG 1 cut(s) 1694
BstBI TTCGAA 1 cut(s) 959
BstC8I GCNNGC 4 cut(s) 91, 429, 610, 1255
BstDEI CTNAG 2 cut(s) 488, 529
BstENI CCTNNNNNAGG 1 cut(s) 862
BstF5I GGATG 3 cut(s) 1171, 1391, 1564
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 2 cut(s) 85, 758
BstHHI GCGC 3 cut(s) 84, 757, 1658
BstKTI GATC 2 cut(s) 181, 1201
BstMAI GTCTC 5 cut(s) 62, 280, 310, 974, 1127
BstMBI GATC 2 cut(s) 178, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 90, 548, 664, 754, 1354
BstNSI RCATGY 2 cut(s) 697, 1257
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 22, 91, 565, 651
BstV2I GAAGAC 1 cut(s) 1266
BsuRI GGCC 3 cut(s) 93, 685, 1125
BtgZI GCGATG 1 cut(s) 1662
BtsCI GGATG 3 cut(s) 1171, 1391, 1564
BtsIMutI CAGTG 4 cut(s) 501, 537, 1419, 1554
Cac8I GCNNGC 4 cut(s) 91, 429, 610, 1255
CciI TCATGA 1 cut(s) 1615
CfoI GCGC 3 cut(s) 84, 757, 1658
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 164, 1322
CseI GACGC 2 cut(s) 206, 779
Csp6I GTAC 2 cut(s) 293, 1085
CviAII CATG 6 cut(s) 694, 728, 1178, 1254, 1503, 1616
CviQI GTAC 2 cut(s) 293, 1085
DdeI CTNAG 2 cut(s) 488, 529
DpnI GATC 2 cut(s) 180, 1200
DpnII GATC 2 cut(s) 178, 1198
EaeI YGGCCR 1 cut(s) 683
Eam1104I CTCTTC 2 cut(s) 1071, 1695
EarI CTCTTC 2 cut(s) 1071, 1695
EciI GGCGGA 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 1023
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 2 cut(s) 164, 1322
Eco53kI GAGCTC 1 cut(s) 526
EcoICRI GAGCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 862
EcoO109I RGGNCCY 1 cut(s) 1322
EcoRI GAATTC 2 cut(s) 634, 955
EcoT14I CCWWGG 1 cut(s) 1023
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 1023
Esp3I CGTCTC 2 cut(s) 280, 1127
FaeI CATG 6 cut(s) 697, 731, 1181, 1257, 1506, 1619
FalI AAGNNNNNCTT 1 cut(s) 1744
FaqI GGGAC 2 cut(s) 150, 665
FatI CATG 6 cut(s) 693, 727, 1177, 1253, 1502, 1615
FauI CCCGC 1 cut(s) 601
FblI GTMKAC 1 cut(s) 368
FokI GGATG 3 cut(s) 1178, 1398, 1571
FriOI GRGCYC 1 cut(s) 528
FspBI CTAG 2 cut(s) 1065, 1541
FspI TGCGCA 1 cut(s) 1657
GlaI GCGC 3 cut(s) 83, 756, 1657
GsuI CTGGAG 1 cut(s) 770
HaeII RGCGCY 2 cut(s) 85, 758
HaeIII GGCC 3 cut(s) 93, 685, 1125
HapII CCGG 2 cut(s) 90, 643
HgaI GACGC 2 cut(s) 206, 779
HhaI GCGC 3 cut(s) 84, 757, 1658
Hin1I GRCGYC 2 cut(s) 198, 270
Hin1II CATG 6 cut(s) 697, 731, 1181, 1257, 1506, 1619
Hin6I GCGC 3 cut(s) 82, 755, 1656
HinP1I GCGC 3 cut(s) 82, 755, 1656
HincII GTYRAC 2 cut(s) 1429, 1454
HindII GTYRAC 2 cut(s) 1429, 1454
HindIII AAGCTT 2 cut(s) 470, 1392
HinfI GANTC 6 cut(s) 283, 320, 653, 1447, 1519, 1699
HpaII CCGG 2 cut(s) 90, 643
HphI GGTGA 5 cut(s) 97, 143, 960, 989, 1316
Hpy166II GTNNAC 4 cut(s) 40, 369, 1429, 1454
Hpy188I TCNGA 5 cut(s) 67, 325, 379, 673, 862
Hpy8I GTNNAC 4 cut(s) 40, 369, 1429, 1454
Hpy99I CGWCG 4 cut(s) 200, 272, 275, 458
HpyAV CCTTC 5 cut(s) 244, 1183, 1336, 1376, 1678
HpyCH4III ACNGT 5 cut(s) 458, 496, 985, 1372, 1423
HpyCH4IV ACGT 2 cut(s) 270, 1486
HpyCH4V TGCA 9 cut(s) 478, 571, 598, 721, 1169, 1238, 1253, 1491, 1502
HpyF10VI GCNNNNNNNGC 5 cut(s) 90, 548, 664, 754, 1354
HpyF3I CTNAG 2 cut(s) 488, 529
HpySE526I ACGT 2 cut(s) 270, 1486
Hsp92I GRCGYC 2 cut(s) 198, 270
Hsp92II CATG 6 cut(s) 697, 731, 1181, 1257, 1506, 1619
HspAI GCGC 3 cut(s) 82, 755, 1656
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
Kzo9I GATC 2 cut(s) 178, 1198
LguI GCTCTTC 1 cut(s) 1695
LmnI GCTCC 3 cut(s) 386, 734, 886
Lsp1109I GCAGC 4 cut(s) 22, 91, 565, 651
LweI GCATC 4 cut(s) 580, 607, 1156, 1500
MaeI CTAG 2 cut(s) 1065, 1541
MaeII ACGT 2 cut(s) 270, 1486
MalI GATC 2 cut(s) 180, 1200
MboI GATC 2 cut(s) 178, 1198
MfeI CAATTG 1 cut(s) 1629
MhlI GDGCHC 2 cut(s) 528, 1613
MlsI TGGCCA 1 cut(s) 685
MluNI TGGCCA 1 cut(s) 685
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 3 cut(s) 712, 1249, 1647
Mox20I TGGCCA 1 cut(s) 685
MroNI GCCGGC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 685
MseI TTAA 6 cut(s) 468, 1041, 1565, 1575, 1583, 1695
MslI CAYNNNNRTG 1 cut(s) 422
Msp20I TGGCCA 1 cut(s) 685
MspCI CTTAAG 1 cut(s) 1694
MspI CCGG 2 cut(s) 90, 643
MspR9I CCNGG 1 cut(s) 643
MunI CAATTG 1 cut(s) 1629
Mva1269I GAATGC 3 cut(s) 347, 612, 1060
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 5 cut(s) 90, 548, 664, 754, 1354
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 1 cut(s) 643
NdeII GATC 2 cut(s) 178, 1198
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 6 cut(s) 697, 731, 1181, 1257, 1506, 1619
NlaIV GGNNCC 4 cut(s) 166, 388, 736, 1324
NsbI TGCGCA 1 cut(s) 1657
NspI RCATGY 2 cut(s) 697, 1257
NspV TTCGAA 1 cut(s) 959
PaeI GCATGC 1 cut(s) 1257
PagI TCATGA 1 cut(s) 1615
PciSI GCTCTTC 1 cut(s) 1695
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 3 cut(s) 347, 612, 1060
PdiI GCCGGC 1 cut(s) 91
PfeI GAWTC 5 cut(s) 283, 320, 1447, 1519, 1699
PflFI GACNNNGTC 1 cut(s) 272
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
PpuMI RGGWCCY 1 cut(s) 1322
Psp124BI GAGCTC 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 1322
PspN4I GGNNCC 4 cut(s) 166, 388, 736, 1324
PspPI GGNCC 2 cut(s) 164, 1322
PspPPI RGGWCCY 1 cut(s) 1322
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 2 cut(s) 294, 1086
RsaNI GTAC 2 cut(s) 293, 1085
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 1695
SaqAI TTAA 6 cut(s) 468, 1041, 1565, 1575, 1583, 1695
Sau3AI GATC 2 cut(s) 178, 1198
Sau96I GGNCC 2 cut(s) 164, 1322
ScaI AGTACT 1 cut(s) 1086
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 643
SduI GDGCHC 2 cut(s) 528, 1613
SfaNI GCATC 4 cut(s) 580, 607, 1156, 1500
SfcI CTRYAG 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 959
SinI GGWCC 2 cut(s) 164, 1322
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 315, 1694
SmoI CTYRAG 2 cut(s) 315, 1694
SphI GCATGC 1 cut(s) 1257
SspI AATATT 1 cut(s) 1157
SspMI CTAG 2 cut(s) 1065, 1541
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 5 cut(s) 458, 496, 985, 1372, 1423
TaiI ACGT 2 cut(s) 273, 1489
TaqI TCGA 8 cut(s) 96, 177, 588, 782, 959, 1052, 1295, 1710
TaqII GACCGA 1 cut(s) 152
TatI WGTACW 2 cut(s) 292, 1084
TauI GCSGC 6 cut(s) 34, 233, 243, 260, 263, 1125
TfiI GAWTC 5 cut(s) 283, 320, 1447, 1519, 1699
Tru1I TTAA 6 cut(s) 468, 1041, 1565, 1575, 1583, 1695
Tru9I TTAA 6 cut(s) 468, 1041, 1565, 1575, 1583, 1695
TscAI CASTG 4 cut(s) 501, 537, 1426, 1554
TseI GCWGC 4 cut(s) 10, 79, 578, 664
TspDTI ATGAA 5 cut(s) 406, 957, 1089, 1110, 1326
TspRI CASTG 4 cut(s) 501, 537, 1426, 1554
Tth111I GACNNNGTC 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 1694
VpaK11BI GGWCC 2 cut(s) 164, 1322
XagI CCTNNNNNAGG 1 cut(s) 862
XapI RAATTY 5 cut(s) 481, 584, 634, 955, 1650
XceI RCATGY 2 cut(s) 697, 1257
XcmI CCANNNNNNNNNTGG 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 368
XspI CTAG 2 cut(s) 1065, 1541
ZraI GACGTC 1 cut(s) 271
ZrmI AGTACT 1 cut(s) 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.