Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000551.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

116460 .. 117669

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atggctaattcgctatattcactattcaatgtcattcgccccttaccgccggttcattcaaagatattcggtttgtttcttcacaaactcgaacgcgagcggccgccggtcacaatttctggtatcgactccggcgacgattcaggttccatccttccttctattgcctgcccattgtgcaagattgtattttgggaagcaagaggttctcttgcagtagcaacgctggtatttgatgctgctggaaggggaagcaagttccctcatggagttaattctggatcctggcattattcaagccatggagaatcatatgcttatggagacaataggttacctggtaatcttgtattatcttacaaagagttttcaagggatagaaatttcttgagacttgaggttgaggctaaggaagtgctgggtgcattgtttgctaaattgcagagccaagttgaattggcagataaagaagcttccccagcttccagtgatgattcagccttggttcatgtcattaattcatgcatatcgcttggatggttaaacaaggcacatgaccttcttgatgaaatgtgcttggctggtgtaagaactggttcttccgtatacgccgctcttttaaaagcatattgtgaagcaaaccaagcaggaaatgcagcatcactattaagagatgctcgtaaggctggtatccagctagatgcaagcagtgatgaggcactgatccgatcgaaggtgcttcaaaatgatacacagggagctcttcatttgtacacagagaggttgagcggttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

265

Amino Acids

28.72

Weight (kDa)

6.24

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	100, 614, 789
AccI	GTMKAC	1 cut(s)	606
AccII	CGCG	1 cut(s)	96
AciI	CCGC	5 cut(s)	47, 100, 104, 612, 789
AclWI	GGATC	3 cut(s)	276, 289, 718
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	773
AfiI	CCNNNNNNNGG	1 cut(s)	733
AgsI	TTSAA	6 cut(s)	28, 60, 297, 372, 455, 743
AjnI	CCWGG	2 cut(s)	284, 337
AluBI	AGCT	4 cut(s)	473, 482, 697, 761
AluI	AGCT	4 cut(s)	473, 482, 697, 761
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	2 cut(s)	318, 385
AlwI	GGATC	3 cut(s)	276, 289, 718
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	239, 656
ApoI	RAATTY	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	595
BamHI	GGATCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	226, 668
BccI	CCATC	2 cut(s)	158, 531
BciT130I	CCWGG	2 cut(s)	286, 339
BciVI	GTATCC	1 cut(s)	701
BcoDI	GTCTC	2 cut(s)	318, 385
BfaI	CTAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	701
BisI	GCNGC	5 cut(s)	101, 104, 240, 612, 657
BlsI	GCNGC	5 cut(s)	102, 105, 241, 613, 658
Bme1390I	CCNGG	2 cut(s)	286, 339
BmiI	GGNNCC	2 cut(s)	148, 283
BmrFI	CCNGG	2 cut(s)	286, 339
BmsI	GCATC	4 cut(s)	226, 664, 668, 691
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	409, 416
BsaJI	CCNNGG	2 cut(s)	301, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse118I	RCCGGY	2 cut(s)	49, 106
Bse1I	ACTGG	2 cut(s)	486, 598
BseBI	CCWGG	2 cut(s)	286, 339
BseDI	CCNNGG	2 cut(s)	301, 501
BseGI	GGATG	2 cut(s)	150, 542
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseNI	ACTGG	2 cut(s)	486, 598
BseX3I	CGGCCG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	226, 668
BseYI	CCCAGC	2 cut(s)	418, 478
Bsh1236I	CGCG	1 cut(s)	96
Bsh1285I	CGRYCG	2 cut(s)	104, 731
BshFI	GGCC	1 cut(s)	103
BsiEI	CGRYCG	2 cut(s)	104, 731
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	3 cut(s)	50, 107, 132
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	318, 385
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp1407I	TGTACA	1 cut(s)	771
Bsp143I	GATC	3 cut(s)	281, 723, 728
Bsp19I	CCATGG	1 cut(s)	301
BspACI	CCGC	5 cut(s)	47, 100, 104, 612, 789
BspANI	GGCC	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	148, 283
BspPI	GGATC	3 cut(s)	276, 289, 718
BspQI	GCTCTTC	1 cut(s)	768
BsrBI	CCGCTC	3 cut(s)	100, 614, 789
BsrFI	RCCGGY	2 cut(s)	49, 106
BsrGI	TGTACA	1 cut(s)	771
BsrI	ACTGG	2 cut(s)	486, 598
BssAI	RCCGGY	2 cut(s)	49, 106
BssECI	CCNNGG	2 cut(s)	301, 501
BssMI	GATC	3 cut(s)	281, 723, 728
BssNAI	GTATAC	1 cut(s)	607
BssT1I	CCWWGG	2 cut(s)	301, 501
Bst1107I	GTATAC	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	286, 339
Bst6I	CTCTTC	1 cut(s)	768
BstAPI	GCANNNNNTGC	2 cut(s)	431, 653
BstAUI	TGTACA	1 cut(s)	771
BstC8I	GCNNGC	3 cut(s)	98, 169, 706
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	301
BstEII	GGTNACC	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	150, 542
BstFNI	CGCG	1 cut(s)	96
BstKTI	GATC	3 cut(s)	284, 726, 731
BstMAI	GTCTC	2 cut(s)	318, 385
BstMBI	GATC	3 cut(s)	281, 723, 728
BstMCI	CGRYCG	2 cut(s)	104, 731
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 431, 479, 644, 653, 683
BstNI	CCWGG	2 cut(s)	286, 339
BstPI	GGTNACC	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	284, 337
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	226, 668
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BstZ17I	GTATAC	1 cut(s)	607
BstZI	CGGCCG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	701
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	150, 542
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	3 cut(s)	493, 715, 719
Cac8I	GCNNGC	3 cut(s)	98, 169, 706
CciNI	GCGGCCGC	1 cut(s)	101
Cfr10I	RCCGGY	2 cut(s)	49, 106
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	772
CviAII	CATG	5 cut(s)	266, 302, 509, 522, 554
CviQI	GTAC	1 cut(s)	772
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	3 cut(s)	283, 725, 730
DpnII	GATC	3 cut(s)	281, 723, 728
DraI	TTTAAA	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	101
EagI	CGGCCG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	761
EclXI	CGGCCG	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	301, 501
Eco24I	GRGCYC	1 cut(s)	763
Eco52I	CGGCCG	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	761
Eco91I	GGTNACC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	284, 337
EcoT14I	CCWWGG	2 cut(s)	301, 501
EcoT22I	ATGCAT	1 cut(s)	527
EcoT38I	GRGCYC	1 cut(s)	763
ErhI	CCWWGG	2 cut(s)	301, 501
FaeI	CATG	5 cut(s)	269, 305, 512, 525, 557
FatI	CATG	5 cut(s)	265, 301, 508, 521, 553
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	5 cut(s)	101, 104, 240, 612, 657
FokI	GGATG	2 cut(s)	137, 549
FriOI	GRGCYC	1 cut(s)	763
Fsp4HI	GCNGC	5 cut(s)	101, 104, 240, 612, 657
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	5 cut(s)	101, 104, 240, 612, 657
GsaI	CCCAGC	2 cut(s)	422, 482
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	3 cut(s)	50, 107, 132
Hin1II	CATG	5 cut(s)	269, 305, 512, 525, 557
HindIII	AAGCTT	1 cut(s)	471
HinfI	GANTC	4 cut(s)	128, 140, 308, 494
HpaII	CCGG	3 cut(s)	50, 107, 132
Hpy166II	GTNNAC	2 cut(s)	607, 774
Hpy188I	TCNGA	1 cut(s)	728
Hpy188III	TCNNGA	3 cut(s)	279, 388, 563
Hpy8I	GTNNAC	2 cut(s)	607, 774
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	5 cut(s)	164, 168, 240, 569, 727
HpyCH4V	TGCA	7 cut(s)	180, 215, 425, 442, 525, 656, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 431, 479, 644, 653, 683
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	5 cut(s)	269, 305, 512, 525, 557
Kzo9I	GATC	3 cut(s)	281, 723, 728
LguI	GCTCTTC	1 cut(s)	768
LmnI	GCTCC	1 cut(s)	758
Lsp1109I	GCAGC	2 cut(s)	226, 668
LweI	GCATC	4 cut(s)	226, 664, 668, 691
MabI	ACCWGGT	1 cut(s)	337
MaeI	CTAG	1 cut(s)	698
MaeIII	GTNAC	2 cut(s)	109, 333
MalI	GATC	3 cut(s)	283, 725, 730
MbiI	CCGCTC	3 cut(s)	100, 614, 789
MboI	GATC	3 cut(s)	281, 723, 728
MboII	GAAGA	3 cut(s)	71, 591, 755
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	7 cut(s)	7, 114, 274, 382, 437, 455, 517
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	6 cut(s)	197, 273, 391, 397, 709, 774
Mph1103I	ATGCAT	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	595
MseI	TTAA	5 cut(s)	273, 516, 542, 620, 668
MspI	CCGG	3 cut(s)	50, 107, 132
MspR9I	CCNGG	2 cut(s)	286, 339
MvaI	CCWGG	2 cut(s)	286, 339
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	6 cut(s)	177, 431, 479, 644, 653, 683
NcoI	CCATGG	1 cut(s)	301
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	281, 723, 728
NlaIII	CATG	5 cut(s)	269, 305, 512, 525, 557
NlaIV	GGNNCC	2 cut(s)	148, 283
NmuCI	GTSAC	1 cut(s)	109
NotI	GCGGCCGC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	527
PciSI	GCTCTTC	1 cut(s)	768
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	140, 308, 494
PkrI	GCNGC	5 cut(s)	102, 105, 241, 613, 658
Ple19I	CGATCG	1 cut(s)	731
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	284, 337
PspEI	GGTNACC	1 cut(s)	333
PspFI	CCCAGC	2 cut(s)	418, 478
PspGI	CCWGG	2 cut(s)	284, 337
PspN4I	GGNNCC	2 cut(s)	148, 283
PsuI	RGATCY	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	731
RsaI	GTAC	1 cut(s)	773
RsaNI	GTAC	1 cut(s)	772
SacI	GAGCTC	1 cut(s)	763
SapI	GCTCTTC	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	273, 516, 542, 620, 668
SatI	GCNGC	5 cut(s)	101, 104, 240, 612, 657
Sau3AI	GATC	3 cut(s)	281, 723, 728
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	286, 339
SduI	GDGCHC	1 cut(s)	763
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	4 cut(s)	226, 664, 668, 691
SmlI	CTYRAG	2 cut(s)	388, 395
SmoI	CTYRAG	2 cut(s)	388, 395
Sse9I	AATT	7 cut(s)	7, 114, 274, 382, 437, 455, 517
SsiI	CCGC	5 cut(s)	47, 100, 104, 612, 789
SspMI	CTAG	1 cut(s)	698
SstI	GAGCTC	1 cut(s)	763
StyD4I	CCNGG	2 cut(s)	284, 337
StyI	CCWWGG	2 cut(s)	301, 501
TaqI	TCGA	3 cut(s)	90, 126, 731
TasI	AATT	7 cut(s)	7, 114, 274, 382, 437, 455, 517
TatI	WGTACW	1 cut(s)	771
TauI	GCSGC	3 cut(s)	103, 106, 614
TfiI	GAWTC	3 cut(s)	140, 308, 494
Tru1I	TTAA	5 cut(s)	273, 516, 542, 620, 668
Tru9I	TTAA	5 cut(s)	273, 516, 542, 620, 668
TscAI	CASTG	3 cut(s)	493, 715, 726
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	239, 656
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	5 cut(s)	44, 497, 510, 582, 755
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	3 cut(s)	493, 715, 726
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.