Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000556.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

242955 .. 245959

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtatgatcattttgctgcttcctctcacagcaggttcggaagtgcttcctctcacagcaagttcggaagtgcttcctctcacagcacagcagtctcaaactgggccttagtctacatcgacggcttcaacttcctcatcgattgtggctggaacgaccacttcgaccccttcctcctccaacctctctccggtgtcgcttccactgtagacgccgtcctcttatcacatcccaacacattccacctcgacgcgcttccctacgccgcgaaacacctcggcctcgccgatcaatacctctcccgcaaggtagggaaaaggagagggaattgtaatctcgcctcatgtggctgggcatctgttgtgtggaagataactaaggatggagaggatgttatatatgctgtggacttcaaccatcgaaaagaaaagcatttgaatggaattaatcagtcatcgtttgtgcggcctgctgttctaataacagaagcctataatgctttgaacaatcagccttatagacgccataaggacagagaatttataggtactttgagctcccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

188

Amino Acids

20.91

Weight (kDa)

8.44

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B_6	PF16661	37 - 91	3.2e-09	Metallo-beta-lactamase superfamily domain
Lactamase_B_6	PF16661	122 - 158	1.3e-08	Metallo-beta-lactamase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	24
AccI	GTMKAC	2 cut(s)	114, 210
AccII	CGCG	2 cut(s)	254, 269
AciI	CCGC	3 cut(s)	267, 304, 466
AcsI	RAATTY	1 cut(s)	539
AcyI	GRCGYC	2 cut(s)	213, 523
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	130, 415, 439, 505
AluBI	AGCT	1 cut(s)	558
AluI	AGCT	1 cut(s)	558
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	3 cut(s)	105, 280, 467
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	539
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	2 cut(s)	46, 73
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	105
BanII	GRGCYC	1 cut(s)	560
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	377, 426
BceAI	ACGGC	2 cut(s)	139, 200
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	24
BisI	GCNGC	3 cut(s)	18, 267, 467
BlsI	GCNGC	3 cut(s)	19, 268, 468
BmgT120I	GGNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	365
BmuI	ACTGGG	1 cut(s)	112
Bsa29I	ATCGAT	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	213, 523
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	107
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	3 cut(s)	229, 388, 397
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	254, 269
BshFI	GGCC	3 cut(s)	107, 282, 469
BshVI	ATCGAT	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	560
BsiSI	CCGG	1 cut(s)	192
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	107, 282, 469
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	7, 289
BspACI	CCGC	3 cut(s)	267, 304, 466
BspANI	GGCC	3 cut(s)	107, 282, 469
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	2 cut(s)	254, 269
BspMI	ACCTGC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	7, 289
BssNI	GRCGYC	2 cut(s)	213, 523
Bst4CI	ACNGT	1 cut(s)	208
BstACI	GRCGYC	2 cut(s)	213, 523
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	2 cut(s)	109, 378
BstF5I	GGATG	3 cut(s)	229, 388, 397
BstFNI	CGCG	2 cut(s)	254, 269
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	2 cut(s)	10, 292
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	7, 289
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	207
BstUI	CGCG	2 cut(s)	254, 269
BstV1I	GCAGC	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	107, 282, 469
BsuTUI	ATCGAT	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	229, 388, 397
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	471
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	3 cut(s)	221, 260, 531
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	1 cut(s)	345
CviJI	RGCY	9 cut(s)	107, 126, 150, 282, 351, 469, 491, 514, 558
CviKI_1	RGCY	9 cut(s)	107, 126, 150, 282, 351, 469, 491, 514, 558
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	2 cut(s)	109, 378
DpnI	GATC	2 cut(s)	9, 291
DpnII	GATC	2 cut(s)	7, 289
Ecl136II	GAGCTC	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	558
EcoICRI	GAGCTC	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	560
FaeI	CATG	1 cut(s)	348
FaiI	YATR	9 cut(s)	6, 346, 398, 400, 402, 495, 519, 528, 545
FatI	CATG	1 cut(s)	344
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	2 cut(s)	114, 210
Fnu4HI	GCNGC	3 cut(s)	18, 267, 467
FokI	GGATG	3 cut(s)	216, 395, 404
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	18, 267, 467
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	3 cut(s)	18, 267, 467
GsaI	CCCAGC	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	107, 282, 469
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	3 cut(s)	221, 260, 531
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	213, 523
Hin1II	CATG	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	3 cut(s)	115, 211, 409
Hpy188I	TCNGA	2 cut(s)	41, 68
Hpy8I	GTNNAC	3 cut(s)	115, 211, 409
Hpy99I	CGWCG	2 cut(s)	125, 254
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	2 cut(s)	109, 378
Hsp92I	GRCGYC	2 cut(s)	213, 523
Hsp92II	CATG	1 cut(s)	348
HspAI	GCGC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 289
LmnI	GCTCC	1 cut(s)	563
LpnPI	CCDG	6 cut(s)	19, 88, 136, 205, 337, 483
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	365
MalI	GATC	2 cut(s)	9, 291
MboI	GATC	2 cut(s)	7, 289
MboII	GAAGA	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	560
MluCI	AATT	3 cut(s)	328, 444, 539
MmeI	TCCRAC	1 cut(s)	205
MroXI	GAANNNNTTC	2 cut(s)	46, 73
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	1 cut(s)	192
MvnI	CGCG	2 cut(s)	254, 269
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	2 cut(s)	7, 289
NlaIII	CATG	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 285
PdmI	GAANNNNTTC	2 cut(s)	46, 73
PflFI	GACNNNGTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	19, 268, 468
PshBI	ATTAAT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	560
PspFI	CCCAGC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	560
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	3 cut(s)	18, 267, 467
Sau3AI	GATC	2 cut(s)	7, 289
Sau96I	GGNCC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	8 cut(s)	38, 187, 249, 279, 300, 312, 550, 560
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	207
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	3 cut(s)	328, 444, 539
SsiI	CCGC	3 cut(s)	267, 304, 466
SstI	GAGCTC	1 cut(s)	560
TaaI	ACNGT	1 cut(s)	208
TaqI	TCGA	5 cut(s)	120, 141, 165, 249, 421
TasI	AATT	3 cut(s)	328, 444, 539
TauI	GCSGC	2 cut(s)	269, 469
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	17
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	539
XmiI	GTMKAC	2 cut(s)	114, 210
XmnI	GAANNNNTTC	2 cut(s)	46, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.