Rmu_sc0000570.1_g000029

Nitric oxide synthase-interacting

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000570.1
Physical Location & Seq
Reverse (-)
146165 .. 146608
444 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ctgccttctgctacgccagaagctcctgttaaagtggctgccccccctgaatgcacaacctgtccagaaggaagcgagaaactaaagctgaagtctcttttccctatccatttcactgaagacaccaacgacgagaagaaatcaacgcctcttgacaagacatttatctgtccgagctgcaaggttaccttaacaaacacgctatcactcgtggctcttagctcatgtggccacgtcttctgtaagaagtgtgctgataagttcatacctgtagataaggtttgtctcgtttgcaacaagggatgcaaagaaaggaacttggtgaacctgaaaaaaggaggaaccggctttgctggccacgacgatgatcttgaagccaaagatttcaagcacttggggagtggctcaggtcttgggttagtgagacccgcagcaaagacttaa

Protein Analysis

147

Amino Acids

15.65

Weight (kDa)

8.52

Isoelectric Point (pI)

34.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rtf2 PF04641 29 - 111 1.3e-09 Rtf2 RING-finger
zf-RING_5 PF14634 57 - 100 1.4e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031083)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000570.1_g000029 Rmu_sc0000570.1_g000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 429
AcoI YGGCCR 2 cut(s) 229, 355
AcuI CTGAAG 2 cut(s) 110, 138
AgsI TTSAA 2 cut(s) 374, 388
AjiI CACGTC 1 cut(s) 235
AluBI AGCT 4 cut(s) 23, 88, 177, 222
AluI AGCT 4 cut(s) 23, 88, 177, 222
Alw26I GTCTC 3 cut(s) 99, 290, 418
AoxI GGCC 2 cut(s) 229, 355
ApeKI GCWGC 3 cut(s) 38, 177, 431
AsuHPI GGTGA 1 cut(s) 334
BalI TGGCCA 2 cut(s) 231, 357
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 126, 229
BbvI GCAGC 2 cut(s) 25, 164
BcoDI GTCTC 3 cut(s) 99, 290, 418
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 3 cut(s) 39, 178, 432
BlsI GCNGC 3 cut(s) 40, 179, 433
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 343
BmsI GCATC 1 cut(s) 293
BpiI GAAGAC 2 cut(s) 126, 229
Bpu10I CCTNAGC 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 344
BseGI GGATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 25, 164
BshFI GGCC 2 cut(s) 231, 357
BsiSI CCGG 1 cut(s) 345
BsmAI GTCTC 3 cut(s) 99, 290, 418
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 231, 357
Bso31I GGTCTC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 1 cut(s) 429
BspANI GGCC 2 cut(s) 231, 357
BspCNI CTCAG 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 344
BssAI RCCGGY 1 cut(s) 344
BssMI GATC 1 cut(s) 367
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 218, 406
BstEII GGTNACC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 3 cut(s) 99, 290, 418
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 2 cut(s) 228, 354
BstPI GGTNACC 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 270
BstV1I GCAGC 2 cut(s) 25, 164
BstV2I GAAGAC 2 cut(s) 126, 229
BsuRI GGCC 2 cut(s) 231, 357
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 344
CviAII CATG 1 cut(s) 225
DdeI CTNAG 2 cut(s) 218, 406
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 2 cut(s) 229, 355
Eco31I GGTCTC 1 cut(s) 418
Eco57I CTGAAG 2 cut(s) 110, 138
Eco91I GGTNACC 1 cut(s) 184
EcoO65I GGTNACC 1 cut(s) 184
FaeI CATG 1 cut(s) 228
FaiI YATR 2 cut(s) 226, 266
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 1 cut(s) 224
FauI CCCGC 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 39, 178, 432
FokI GGATG 1 cut(s) 315
Fsp4HI GCNGC 3 cut(s) 39, 178, 432
GluI GCNGC 3 cut(s) 39, 178, 432
HaeIII GGCC 2 cut(s) 231, 357
HapII CCGG 1 cut(s) 345
Hin1II CATG 1 cut(s) 228
HpaII CCGG 1 cut(s) 345
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 3 cut(s) 65, 152, 371
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 2 cut(s) 134, 365
HpyAV CCTTC 2 cut(s) 15, 62
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 54, 180, 294, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 354
HpyF3I CTNAG 2 cut(s) 218, 406
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 228
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 2 cut(s) 25, 164
LweI GCATC 1 cut(s) 293
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 3 cut(s) 131, 148, 229
MlsI TGGCCA 2 cut(s) 231, 357
MluNI TGGCCA 2 cut(s) 231, 357
MnlI CCTC 2 cut(s) 159, 332
Mox20I TGGCCA 2 cut(s) 231, 357
MscI TGGCCA 2 cut(s) 231, 357
MseI TTAA 3 cut(s) 30, 191, 442
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 2 cut(s) 231, 357
MspI CCGG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 228, 354
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 343
PctI GAATGC 1 cut(s) 56
PkrI GCNGC 3 cut(s) 40, 179, 433
PspEI GGTNACC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 3 cut(s) 30, 191, 442
SatI GCNGC 3 cut(s) 39, 178, 432
Sau3AI GATC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 293
SfcI CTRYAG 1 cut(s) 270
SmiMI CAYNNNNRTG 1 cut(s) 363
SsiI CCGC 1 cut(s) 429
TaiI ACGT 1 cut(s) 237
Tru1I TTAA 3 cut(s) 30, 191, 442
Tru9I TTAA 3 cut(s) 30, 191, 442
TscAI CASTG 1 cut(s) 121
TseI GCWGC 3 cut(s) 38, 177, 431
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.