Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000570.1

Orthogroup ID

OG0031083

Physical Location & Seq

Genomic Coordinates Forward (+)

146651 .. 147007

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ctgaagtctcttttccctatccatttcactgaagacaccaacgacgagaagaaatcaacgcctcttgacaagacatttatctgtccgagctgcaaggttaccttaacaaacacgctatcactcgtggctcttagctcatgtggccacgtcttctgtaagaagtgtgctgataagttcatacctgtagataaggtttgtctcgtttgcaacaagggatgcaaagaaaggaacttggtgaacctgaaaaaaggagggaccggctttgctggccacgacgatgatcttgaagccaaagatttcaagcacttggggagtggctcaggtcttgggttagtgagacccgcagcaaagacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019538 GO:0019787 GO:0031647 GO:0031648 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rtf2 zf-NOSIP zf-RING_UBOX

Protein Analysis

118

Amino Acids

12.71

Weight (kDa)

8.8

Isoelectric Point (pI)

19.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rtf2	PF04641	1 - 83	5.4e-10	Rtf2 RING-finger
zf-RING_5	PF14634	28 - 71	1.3e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	28 - 56	6.4e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031083)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000570.1_g000029 Rmu_sc0000570.1_g000030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AcoI	YGGCCR	2 cut(s)	142, 268
AcuI	CTGAAG	2 cut(s)	23, 51
AgsI	TTSAA	2 cut(s)	287, 301
AjiI	CACGTC	1 cut(s)	148
AluBI	AGCT	2 cut(s)	90, 135
AluI	AGCT	2 cut(s)	90, 135
Alw26I	GTCTC	3 cut(s)	12, 203, 331
AoxI	GGCC	2 cut(s)	142, 268
ApeKI	GCWGC	2 cut(s)	90, 344
AspS9I	GGNCC	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	255
BalI	TGGCCA	2 cut(s)	144, 270
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	39, 142
BbvI	GCAGC	1 cut(s)	77
BcoDI	GTCTC	3 cut(s)	12, 203, 331
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	91, 345
BlsI	GCNGC	2 cut(s)	92, 346
Bme18I	GGWCC	1 cut(s)	255
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	206
BpiI	GAAGAC	2 cut(s)	39, 142
Bpu10I	CCTNAGC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	257
BseGI	GGATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	2 cut(s)	144, 270
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	268
BsmAI	GTCTC	3 cut(s)	12, 203, 331
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	144, 270
Bso31I	GGTCTC	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	2 cut(s)	144, 270
BspCNI	CTCAG	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	131, 319
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	3 cut(s)	12, 203, 331
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 267
BstPI	GGTNACC	1 cut(s)	97
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	2 cut(s)	39, 142
BsuRI	GGCC	2 cut(s)	144, 270
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	255
CviAII	CATG	1 cut(s)	138
CviJI	RGCY	8 cut(s)	90, 128, 135, 144, 261, 270, 290, 318
CviKI_1	RGCY	8 cut(s)	90, 128, 135, 144, 261, 270, 290, 318
DdeI	CTNAG	2 cut(s)	131, 319
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
EaeI	YGGCCR	2 cut(s)	142, 268
Eco31I	GGTCTC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	255
Eco57I	CTGAAG	2 cut(s)	23, 51
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
FaeI	CATG	1 cut(s)	141
FaiI	YATR	2 cut(s)	139, 179
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	1 cut(s)	137
FauI	CCCGC	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	91, 345
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	91, 345
GluI	GCNGC	2 cut(s)	91, 345
HaeIII	GGCC	2 cut(s)	144, 270
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	141
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	2 cut(s)	65, 284
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	47, 278
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	93, 207, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 267
HpyF3I	CTNAG	2 cut(s)	131, 319
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	5 cut(s)	195, 252, 254, 271, 306
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	206
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	3 cut(s)	44, 61, 142
MlsI	TGGCCA	2 cut(s)	144, 270
MluNI	TGGCCA	2 cut(s)	144, 270
MnlI	CCTC	2 cut(s)	72, 245
Mox20I	TGGCCA	2 cut(s)	144, 270
MscI	TGGCCA	2 cut(s)	144, 270
MseI	TTAA	2 cut(s)	104, 355
MslI	CAYNNNNRTG	1 cut(s)	276
Msp20I	TGGCCA	2 cut(s)	144, 270
MspI	CCGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	141, 267
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	92, 346
PspEI	GGTNACC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	104, 355
SatI	GCNGC	2 cut(s)	91, 345
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	255
SetI	ASST	9 cut(s)	92, 99, 104, 137, 150, 184, 195, 243, 325
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	276
SsiI	CCGC	1 cut(s)	342
TaiI	ACGT	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	104, 355
Tru9I	TTAA	2 cut(s)	104, 355
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	2 cut(s)	90, 344
TspDTI	ATGAA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.