Rmu_sc0000571.1_g000018

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000571.1
N/A
Physical Location & Seq
Reverse (-)
78269 .. 78694
426 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 426 bp
atggaccgaacaattgtgccaggttttgatataccagctgcttcacttcagtcgtttatcggcattgccactattatattcattgccatttatgatcgcatatttgttccaatagcaagagctttcactagagaactctctggcattacaatgctacgaagaatcggaactcggatgtttatatctattatttccatggtagttgcagctttatttgagatgcaaagggtccaaactgctaaagactataatctggttgataagccaagtgccacggttccaacgagtgtttggtggttaggtcctcagtacttgttaattggactggccgatgttttcactatggttggtctgcaagagttcttctacgatcaggtaccaaatgaattaagagttcttttctctaatataataagatattattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

141

Amino Acids

16.08

Weight (kDa)

8.03

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 1 - 134 1.7e-27 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 327
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 311, 378
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 3 cut(s) 38, 122, 209
AluI AGCT 3 cut(s) 38, 122, 209
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 2 cut(s) 38, 206
Asp718I GGTACC 1 cut(s) 376
AspS9I GGNCC 3 cut(s) 4, 229, 302
AvaII GGWCC 3 cut(s) 4, 229, 302
BanI GGYRCC 1 cut(s) 376
BbvI GCAGC 2 cut(s) 25, 218
BciT130I CCWGG 1 cut(s) 21
BfaI CTAG 1 cut(s) 129
BisI GCNGC 2 cut(s) 39, 207
BlsI GCNGC 2 cut(s) 40, 208
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 3 cut(s) 4, 229, 302
BmgT120I GGNCC 3 cut(s) 4, 229, 302
BmiI GGNNCC 3 cut(s) 230, 279, 378
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 195, 273
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 63, 81
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 195, 273
BseGI GGATG 1 cut(s) 180
BseMI GCAATG 2 cut(s) 63, 81
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 2 cut(s) 25, 218
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 376
BsnI GGCC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 94, 370
Bsp19I CCATGG 1 cut(s) 195
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 230, 279, 378
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 2 cut(s) 63, 81
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 195, 273
BssMI GATC 2 cut(s) 94, 370
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 2 cut(s) 195, 273
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 2 cut(s) 97, 373
BstMBI GATC 2 cut(s) 94, 370
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 2 cut(s) 25, 218
BsuRI GGCC 1 cut(s) 329
BtgI CCRYGG 2 cut(s) 195, 273
BtsCI GGATG 1 cut(s) 180
Cfr13I GGNCC 3 cut(s) 4, 229, 302
Csp6I GTAC 2 cut(s) 310, 377
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 38, 122, 209, 265, 329
CviKI_1 RGCY 5 cut(s) 38, 122, 209, 265, 329
CviQI GTAC 2 cut(s) 310, 377
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 96, 372
DpnII GATC 2 cut(s) 94, 370
EaeI YGGCCR 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 195
Eco47I GGWCC 3 cut(s) 4, 229, 302
Eco57I CTGAAG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 1 cut(s) 199
FaiI YATR 9 cut(s) 32, 77, 93, 101, 182, 197, 249, 344, 410
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 39, 207
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 2 cut(s) 39, 207
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 39, 207
HaeIII GGCC 1 cut(s) 329
Hin1II CATG 1 cut(s) 199
HinfI GANTC 1 cut(s) 162
Hpy188I TCNGA 2 cut(s) 167, 174
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 3 cut(s) 206, 223, 355
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 1 cut(s) 199
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 2 cut(s) 94, 370
LpnPI CCDG 7 cut(s) 6, 33, 48, 126, 239, 311, 359
Lsp1109I GCAGC 2 cut(s) 25, 218
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 129
MalI GATC 2 cut(s) 96, 372
MboI GATC 2 cut(s) 94, 370
MboII GAAGA 2 cut(s) 171, 355
MfeI CAATTG 1 cut(s) 12
MluCI AATT 3 cut(s) 12, 318, 386
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 1 cut(s) 315
MseI TTAA 2 cut(s) 317, 389
MslI CAYNNNNRTG 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 21
NcoI CCATGG 1 cut(s) 195
NdeII GATC 2 cut(s) 94, 370
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 3 cut(s) 230, 279, 378
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 2 cut(s) 40, 208
PpuMI RGGWCCY 1 cut(s) 302
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 3 cut(s) 230, 279, 378
PspPI GGNCC 3 cut(s) 4, 229, 302
PspPPI RGGWCCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 38
RsaI GTAC 2 cut(s) 311, 378
RsaNI GTAC 2 cut(s) 310, 377
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 317, 389
SatI GCNGC 2 cut(s) 39, 207
Sau3AI GATC 2 cut(s) 94, 370
Sau96I GGNCC 3 cut(s) 4, 229, 302
ScaI AGTACT 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 21
SetI ASST 6 cut(s) 25, 40, 124, 211, 304, 378
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 3 cut(s) 4, 229, 302
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 3 cut(s) 12, 318, 386
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 277
TaqII GACCGA 1 cut(s) 21
TasI AATT 3 cut(s) 12, 318, 386
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 317, 389
Tru9I TTAA 2 cut(s) 317, 389
TseI GCWGC 2 cut(s) 38, 206
TspDTI ATGAA 2 cut(s) 70, 399
VpaK11BI GGWCC 3 cut(s) 4, 229, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.