Rmu_sc0000580.1_g000080

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000580.1
N/A
Physical Location & Seq
Reverse (-)
343900 .. 344301
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 327 bp
atggggggtcatgatatgggccgtggaggccctcccaatgtatggagcagagttggtggtgttggctatagtggtcatggaaacaaggtgcaaagggcacctaagaatccttcagtcaaacaagaaagagtaagcaataaaccatgctataggaagtctaaagaacaagaggctcactatatggaagaaggtggccatgacccagatgtcaacctcacaattgcagactttagtggcaacaaggaacttgctcagtcaatgaatggactagattttgaccgatttgctttatctatttattttccaaagacagatgtgaaggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.88

Weight (kDa)

8.74

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 97
AccB7I CCANNNNNTGG 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 193
AcuI CTGAAG 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 42
AoxI GGCC 3 cut(s) 19, 28, 193
AspS9I GGNCC 2 cut(s) 19, 29
BaeGI GKGCMC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 6
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 2 cut(s) 67, 148
BglI GCCNNNNNGGC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 19, 29
BmiI GGNNCC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 100
BshFI GGCC 3 cut(s) 21, 30, 195
BshNI GGYRCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 42
BsnI GGCC 3 cut(s) 21, 30, 195
Bsp1286I GDGCHC 1 cut(s) 100
BspANI GGCC 3 cut(s) 21, 30, 195
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 102, 252
BstDSI CCRYGG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSFI CTRYAG 2 cut(s) 67, 148
BstSLI GKGCMC 1 cut(s) 100
BsuRI GGCC 3 cut(s) 21, 30, 195
BtgI CCRYGG 1 cut(s) 22
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 19, 29
CviAII CATG 4 cut(s) 11, 77, 144, 197
CviJI RGCY 5 cut(s) 21, 30, 66, 173, 195
CviKI_1 RGCY 5 cut(s) 21, 30, 66, 173, 195
DdeI CTNAG 2 cut(s) 102, 252
DrdI GACNNNNNNGTC 1 cut(s) 206
DseDI GACNNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 29
FaeI CATG 4 cut(s) 14, 80, 147, 200
FatI CATG 4 cut(s) 10, 76, 143, 196
FspBI CTAG 1 cut(s) 269
HaeIII GGCC 3 cut(s) 21, 30, 195
Hin1II CATG 4 cut(s) 14, 80, 147, 200
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 120, 182, 313
HpyCH4V TGCA 2 cut(s) 91, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 102, 252
Hsp92II CATG 4 cut(s) 14, 80, 147, 200
LmnI GCTCC 1 cut(s) 45
LpnPI CCDG 1 cut(s) 216
MaeI CTAG 1 cut(s) 269
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 100
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 195
MnlI CCTC 4 cut(s) 20, 42, 163, 224
Mox20I TGGCCA 1 cut(s) 195
MscI TGGCCA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 195
MunI CAATTG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 27
NlaIII CATG 4 cut(s) 14, 80, 147, 200
NlaIV GGNNCC 1 cut(s) 99
PagI TCATGA 1 cut(s) 10
PfeI GAWTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 19, 29
Sau96I GGNCC 2 cut(s) 19, 29
SduI GDGCHC 1 cut(s) 100
SetI ASST 4 cut(s) 90, 103, 193, 216
SfcI CTRYAG 2 cut(s) 67, 148
SfiI GGCCNNNNNGGCC 1 cut(s) 27
Sse9I AATT 1 cut(s) 219
SspMI CTAG 1 cut(s) 269
TaqII GACCGA 1 cut(s) 294
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 42
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.