Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

403514 .. 404447

Gene Structure 934 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ctgccgctgcgttattttggtctctcgctcacgattcttcatgagttacctattgacgacgttctcgccaaatcagcccgtgacgtctccaagttcgcaaccgtggcactcgtcgatgtcgatgtcgattccgaccagtgttttcaaaggcgatgccgaggcgagcccggggcgcgctccggtgtgaggcgaagaaggcgagctgtgatgcggcctgggcgcaaggaagaaggtgaagtctacccccattacttcgacatcactttgattccctccaccattttcttctacaacgcccatcacatcaagatggattccggaactgctgatcacaccaaatggatcggcgcgtttcggacgaagcaggacttcattcatgttgtcgaggctattttcaggggagcgatgaaagggaagctacttaattgtgaactgcccattgccgccggaacgaattccgagataccagttgtactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046540 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DIM1

Protein Analysis

159

Amino Acids

17.94

Weight (kDa)

9.1

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIM1	PF02966	79 - 141	1.9e-20	Mitosis protein DIM1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	2 cut(s)	175, 350
AccIII	TCCGGA	1 cut(s)	317
AciI	CCGC	3 cut(s)	5, 211, 444
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	203, 418
AluI	AGCT	2 cut(s)	203, 418
Alw26I	GTCTC	2 cut(s)	26, 91
AlwI	GGATC	1 cut(s)	350
Ama87I	CYCGRG	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	317
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	1 cut(s)	454
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	4 cut(s)	175, 177, 222, 350
AsuC2I	CCSGG	2 cut(s)	168, 169
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	168
BccI	CCATC	2 cut(s)	304, 306
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	2 cut(s)	168, 169
BcoDI	GTCTC	2 cut(s)	26, 91
BisI	GCNGC	4 cut(s)	5, 8, 212, 444
BlsI	GCNGC	4 cut(s)	6, 9, 213, 445
Bme1390I	CCNGG	3 cut(s)	168, 169, 216
BmeT110I	CYCGRG	1 cut(s)	167
BmrFI	CCNGG	3 cut(s)	168, 169, 216
BmsI	GCATC	2 cut(s)	143, 198
BpuMI	CCSGG	2 cut(s)	168, 169
BsaHI	GRCGYC	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	5 cut(s)	102, 157, 167, 168, 215
BsaWI	WCCGGW	2 cut(s)	179, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	136, 467
Bse3DI	GCAATG	1 cut(s)	438
BseAI	TCCGGA	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	5 cut(s)	102, 157, 167, 168, 215
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseMI	GCAATG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	136, 467
BsePI	GCGCGC	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	175, 350
BshFI	GGCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	167
BsiSI	CCGG	4 cut(s)	168, 180, 318, 447
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	26, 91
BsmBI	CGTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	214
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	317
Bsp143I	GATC	2 cut(s)	328, 342
BspACI	CCGC	3 cut(s)	5, 211, 444
BspANI	GGCC	1 cut(s)	214
BspEI	TCCGGA	1 cut(s)	317
BspFNI	CGCG	2 cut(s)	175, 350
BspHI	TCATGA	1 cut(s)	40
BspPI	GGATC	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	26
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	2 cut(s)	136, 467
BssECI	CCNNGG	5 cut(s)	102, 157, 167, 168, 215
BssHII	GCGCGC	1 cut(s)	173
BssMI	GATC	2 cut(s)	328, 342
BssNI	GRCGYC	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	164, 175, 201
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	2 cut(s)	175, 350
BstHHI	GCGC	4 cut(s)	175, 177, 222, 350
BstKTI	GATC	2 cut(s)	331, 345
BstMAI	GTCTC	2 cut(s)	26, 91
BstMBI	GATC	2 cut(s)	328, 342
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 104, 172, 196, 217
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	166, 167, 214
BstUI	CGCG	2 cut(s)	175, 350
BsuRI	GGCC	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	2 cut(s)	166, 419
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	164, 175, 201
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	4 cut(s)	175, 177, 222, 350
Cfr9I	CCCGGG	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	41, 377
CviJI	RGCY	6 cut(s)	77, 166, 203, 214, 389, 418
CviKI_1	RGCY	6 cut(s)	77, 166, 203, 214, 389, 418
CviQI	GTAC	1 cut(s)	473
DpnI	GATC	2 cut(s)	330, 344
DpnII	GATC	2 cut(s)	328, 342
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	44, 380
FaiI	YATR	3 cut(s)	42, 378, 478
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	2 cut(s)	40, 376
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	5, 8, 212, 444
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	4 cut(s)	5, 8, 212, 444
GlaI	GCGC	4 cut(s)	174, 176, 221, 349
GluI	GCNGC	4 cut(s)	5, 8, 212, 444
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	4 cut(s)	168, 180, 318, 447
HhaI	GCGC	4 cut(s)	175, 177, 222, 350
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	44, 380
Hin6I	GCGC	4 cut(s)	173, 175, 220, 348
HinP1I	GCGC	4 cut(s)	173, 175, 220, 348
HinfI	GANTC	4 cut(s)	34, 128, 268, 314
HpaII	CCGG	4 cut(s)	168, 180, 318, 447
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	241, 431
Hpy188I	TCNGA	3 cut(s)	133, 357, 460
Hpy188III	TCNNGA	4 cut(s)	31, 41, 307, 318
Hpy8I	GTNNAC	2 cut(s)	241, 431
Hpy99I	CGWCG	2 cut(s)	62, 116
HpyAV	CCTTC	2 cut(s)	189, 224
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	60, 84
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 104, 172, 196, 217
HpySE526I	ACGT	2 cut(s)	60, 84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	44, 380
HspAI	GCGC	4 cut(s)	173, 175, 220, 348
Kpn2I	TCCGGA	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 342
LmnI	GCTCC	2 cut(s)	182, 401
LpnPI	CCDG	9 cut(s)	149, 181, 193, 201, 228, 331, 350, 382, 460
LweI	GCATC	2 cut(s)	143, 198
MaeII	ACGT	2 cut(s)	60, 84
MaeIII	GTNAC	2 cut(s)	45, 80
MalI	GATC	2 cut(s)	330, 344
MboI	GATC	2 cut(s)	328, 342
MboII	GAAGA	4 cut(s)	29, 204, 239, 277
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	2 cut(s)	424, 454
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	4 cut(s)	152, 180, 283, 379
MroI	TCCGGA	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	454
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	308
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	4 cut(s)	168, 180, 318, 447
MspR9I	CCNGG	3 cut(s)	168, 169, 216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	175, 350
MwoI	GCNNNNNNNGC	5 cut(s)	74, 104, 172, 196, 217
NciI	CCSGG	2 cut(s)	168, 169
NdeII	GATC	2 cut(s)	328, 342
NlaIII	CATG	2 cut(s)	44, 380
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	80
PagI	TCATGA	1 cut(s)	40
PauI	GCGCGC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	34, 128, 268, 314
PkrI	GCNGC	4 cut(s)	6, 9, 213, 445
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PteI	GCGCGC	1 cut(s)	173
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	5, 8, 212, 444
Sau3AI	GATC	2 cut(s)	328, 342
ScrFI	CCNGG	3 cut(s)	168, 169, 216
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	52, 63, 87, 205, 235, 420
SfaNI	GCATC	2 cut(s)	143, 198
SmaI	CCCGGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	308
Sse9I	AATT	2 cut(s)	424, 454
SsiI	CCGC	3 cut(s)	5, 211, 444
StyD4I	CCNGG	3 cut(s)	166, 167, 214
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	63, 87
TaqI	TCGA	5 cut(s)	114, 120, 126, 255, 384
TasI	AATT	2 cut(s)	424, 454
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	3 cut(s)	7, 214, 446
TfiI	GAWTC	4 cut(s)	34, 128, 268, 314
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	80
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	29, 361, 365, 422
TspMI	CCCGGG	1 cut(s)	167
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	454
XmaI	CCCGGG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	454
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.