Rmu_sc0000588.1_g000014

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000588.1
N/A
Physical Location & Seq
Reverse (-)
41417 .. 41719
303 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
atggatatcacaggtgggttcatgatgtgcaccagcatctcaaggccgatggaatccttggatacgattctcgagcctagccaagacgtgctaactattgagcaagctcaagctttggaagcaaatagagcagccttagaggaaaataaggcaaaagccgtcatcctaatgactcgtcatatggatgattcgctccagttcgagtgtatgaatgaagaagaccctagaaggctgtgggtctcactcgaagaaagatttgacaacgtccgtgactccctgcttcctgacttagaagtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

4.33

Isoelectric Point (pI)

73.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjiI CACGTC 1 cut(s) 88
AluBI AGCT 2 cut(s) 107, 113
AluI AGCT 2 cut(s) 107, 113
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 44
ApaLI GTGCAC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 143
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 78, 225
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 88
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 2 cut(s) 25, 93
BsaI GGTCTC 1 cut(s) 244
BsaJI CCNNGG 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 2 cut(s) 162, 190
BseNI ACTGG 1 cut(s) 196
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 46
Bso31I GGTCTC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 32
BspANI GGCC 1 cut(s) 46
BspHI TCATGA 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 244
BsrI ACTGG 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 136, 289
BstF5I GGATG 2 cut(s) 162, 190
BstMAI GTCTC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 119, 128
BstSLI GKGCMC 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 225
BsuI GTATCC 1 cut(s) 55
BsuRI GGCC 1 cut(s) 46
BtrI CACGTC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 162, 190
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 21
CviAII CATG 1 cut(s) 22
CviJI RGCY 8 cut(s) 46, 76, 81, 107, 113, 134, 158, 232
CviKI_1 RGCY 8 cut(s) 46, 76, 81, 107, 113, 134, 158, 232
DdeI CTNAG 2 cut(s) 136, 289
Eco130I CCWWGG 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 244
Eco32I GATATC 1 cut(s) 7
Eco88I CYCGRG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 180, 182, 209
FatI CATG 1 cut(s) 21
FauNDI CATATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 149, 197
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 78, 225
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 5 cut(s) 53, 67, 172, 188, 272
Hpy166II GTNNAC 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 22, 71, 284
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 222
HpyCH4IV ACGT 2 cut(s) 87, 264
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 128
HpyF3I CTNAG 2 cut(s) 136, 289
HpySE526I ACGT 2 cut(s) 87, 264
Hsp92II CATG 1 cut(s) 25
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 4 cut(s) 46, 209, 290, 297
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 78, 225
MaeII ACGT 2 cut(s) 87, 264
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 3 cut(s) 227, 230, 260
MhlI GDGCHC 1 cut(s) 32
MlyI GAGTC 2 cut(s) 166, 266
MnlI CCTC 1 cut(s) 133
MslI CAYNNNNRTG 2 cut(s) 167, 183
MwoI GCNNNNNNNGC 2 cut(s) 119, 128
NdeI CATATG 1 cut(s) 180
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 269
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 1 cut(s) 21
PfeI GAWTC 3 cut(s) 53, 67, 188
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 2 cut(s) 166, 266
PpsI GAGTC 2 cut(s) 166, 266
PsyI GACNNNGTC 1 cut(s) 263
RseI CAYNNNNRTG 2 cut(s) 167, 183
SatI GCNGC 1 cut(s) 132
SchI GAGTC 2 cut(s) 166, 266
SduI GDGCHC 1 cut(s) 32
SetI ASST 5 cut(s) 16, 90, 109, 115, 267
SfaNI GCATC 1 cut(s) 45
Sfr274I CTCGAG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 167, 183
SmlI CTYRAG 3 cut(s) 40, 71, 108
SmoI CTYRAG 3 cut(s) 40, 71, 108
SspMI CTAG 2 cut(s) 78, 225
StyI CCWWGG 1 cut(s) 57
TaiI ACGT 2 cut(s) 90, 267
TaqI TCGA 3 cut(s) 72, 201, 246
TfiI GAWTC 3 cut(s) 53, 67, 188
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 3 cut(s) 10, 224, 228
TspGWI ACGGA 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 263
VneI GTGCAC 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 71
XspI CTAG 2 cut(s) 78, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.