Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000589.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

39250 .. 41017

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgcttgtacctgaggttttaatgtggtgtcatggtagcccagcgcatagatatggactgtatgctcttcagtggattgttgaagttaatggaaaacagattcctgatttagatgcttttttgaatgtcgcaaaggaaatagaacatggagagtttgttcgtgtacggaccatccacttaaatggaaaacctaaagttttaacgttgaagcaggacttgcactactggcctacatgggaggtcagatttgatcctgattctgctatatggcatcgaaacacaattaaggcaatagactatagttctaatctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

104

Amino Acids

12.18

Weight (kDa)

6.57

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	53
AfaI	GTAC	2 cut(s)	9, 165
AgsI	TTSAA	3 cut(s)	83, 124, 208
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	12
BccI	CCATC	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	298
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	168
BmsI	GCATC	2 cut(s)	103, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse1I	ACTGG	1 cut(s)	230
Bse21I	CCTNAGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	250
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	4
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 226
BstSFI	CTRYAG	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	77
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	8, 164
CviAII	CATG	3 cut(s)	32, 146, 234
CviJI	RGCY	2 cut(s)	39, 229
CviKI_1	RGCY	2 cut(s)	39, 229
CviQI	GTAC	2 cut(s)	8, 164
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	35, 149, 237
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	3 cut(s)	31, 145, 233
FokI	GGATG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	35, 149, 237
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	100, 257
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	2 cut(s)	104, 254
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 226
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	3 cut(s)	35, 149, 237
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	250
LguI	GCTCTTC	1 cut(s)	72
LpnPI	CCDG	6 cut(s)	24, 54, 117, 197, 211, 267
LweI	GCATC	2 cut(s)	103, 280
MaeII	ACGT	1 cut(s)	203
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	1 cut(s)	282
MnlI	CCTC	2 cut(s)	7, 232
MseI	TTAA	5 cut(s)	20, 87, 179, 200, 285
MslI	CAYNNNNRTG	2 cut(s)	51, 180
MwoI	GCNNNNNNNGC	2 cut(s)	217, 226
NdeII	GATC	1 cut(s)	250
NlaIII	CATG	3 cut(s)	35, 149, 237
PciSI	GCTCTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	100, 257
Psp1406I	AACGTT	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	168
RsaI	GTAC	2 cut(s)	9, 165
RsaNI	GTAC	2 cut(s)	8, 164
RseI	CAYNNNNRTG	2 cut(s)	51, 180
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	5 cut(s)	20, 87, 179, 200, 285
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	168
SetI	ASST	5 cut(s)	13, 18, 193, 206, 243
SfaNI	GCATC	2 cut(s)	103, 280
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	51, 180
Sse9I	AATT	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	100, 257
Tru1I	TTAA	5 cut(s)	20, 87, 179, 200, 285
Tru9I	TTAA	5 cut(s)	20, 87, 179, 200, 285
TscAI	CASTG	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.