Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000593.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

62302 .. 66674

Gene Structure 4373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000593.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgaaaaggacatctctggattggacacaacgcttggagattatctttggcattgctagagggatcttgtatcttcatcaagattcgagattaagaattatccacagagacctaaaggccagcaatattctactggattatgatatgaaccccaaacttgcagattttgtgaagtctgatgtctacagtttcggtgttttgctgctagaaatcgttactggtagaaagaacaccggttactactatgataatcctgactcaaatttggttggacatgtttgggacttgtggaaagaaggccgagccttggaaatcgtcgacccatctttgggagaatcctaccccataagtgaagttctacggtgcattcaaatcgcactcctgtgcgtgcaagagtactcaaatgacgggccaaccatgtcaaaagttgtctgtgttagacggtccagtcgtccggtcctccctcgtctcgtccattcgtccggtctcgtccagtcgtcgtccggtgcaatttacttttctggtctcgtccagtctcttccagtcgtcgtctcgtccagtcgtccggtcgtcgtccggtctcgtccttcaagctctcacagaaggtgggcaaacctggagtgcagagagctcaaccacgtctacaacaagaacatggaagtcatggcggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

224

Amino Acids

25.39

Weight (kDa)

9.06

Isoelectric Point (pI)

58.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	447
AccI	GTMKAC	3 cut(s)	183, 318, 642
AciI	CCGC	1 cut(s)	668
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	307, 328, 329
AflIII	ACRYGT	1 cut(s)	274
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	371, 591
AjiI	CACGTC	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	615
AleI	CACNNNNGTG	1 cut(s)	382
AluBI	AGCT	2 cut(s)	594, 631
AluI	AGCT	2 cut(s)	594, 631
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	7 cut(s)	102, 473, 491, 530, 540, 556, 585
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	4 cut(s)	117, 298, 410, 669
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	262
AsiGI	ACCGGT	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	410, 444, 457
AvaII	GGWCC	2 cut(s)	444, 457
BanII	GRGCYC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	7 cut(s)	102, 473, 491, 530, 540, 556, 585
BfaI	CTAG	2 cut(s)	57, 206
BfmI	CTRYAG	1 cut(s)	184
BisI	GCNGC	2 cut(s)	203, 669
BlsI	GCNGC	2 cut(s)	204, 670
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	444, 457
BmgBI	CACGTC	1 cut(s)	640
BmgT120I	GGNCC	3 cut(s)	410, 444, 457
BmrFI	CCNGG	1 cut(s)	617
BpmI	CTGGAG	1 cut(s)	638
BsaI	GGTCTC	4 cut(s)	102, 491, 530, 585
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	6 cut(s)	233, 454, 482, 503, 565, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 328, 329
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	7 cut(s)	138, 223, 447, 493, 532, 542, 558
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	307, 328, 329
BseMI	GCAATG	1 cut(s)	51
BseNI	ACTGG	7 cut(s)	138, 223, 447, 493, 532, 542, 558
BseXI	GCAGC	1 cut(s)	189
BsgI	GTGCAG	1 cut(s)	643
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	4 cut(s)	119, 300, 412, 671
BshTI	ACCGGT	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	6 cut(s)	234, 455, 483, 504, 566, 577
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	307, 328, 329
BsmAI	GTCTC	7 cut(s)	102, 473, 491, 530, 540, 556, 585
BsmBI	CGTCTC	2 cut(s)	473, 556
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	4 cut(s)	119, 300, 412, 671
Bso31I	GGTCTC	4 cut(s)	102, 491, 530, 585
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	668
BspANI	GGCC	4 cut(s)	119, 300, 412, 671
BspPI	GGATC	1 cut(s)	71
BspTNI	GGTCTC	4 cut(s)	102, 491, 530, 585
BsrDI	GCAATG	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	7 cut(s)	138, 223, 447, 493, 532, 542, 558
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	3 cut(s)	188, 363, 444
Bst6I	CTCTTC	1 cut(s)	543
BstC8I	GCNNGC	2 cut(s)	121, 389
BstKTI	GATC	1 cut(s)	66
BstMAI	GTCTC	7 cut(s)	102, 473, 491, 530, 540, 556, 585
BstMBI	GATC	1 cut(s)	63
BstMCI	CGRYCG	1 cut(s)	570
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	4 cut(s)	119, 300, 412, 671
BtrI	CACGTC	1 cut(s)	640
Cac8I	GCNNGC	2 cut(s)	121, 389
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	410, 444, 457
Csp6I	GTAC	1 cut(s)	397
CspAI	ACCGGT	1 cut(s)	233
CviAII	CATG	4 cut(s)	275, 418, 655, 664
CviJI	RGCY	7 cut(s)	119, 300, 305, 412, 594, 631, 671
CviKI_1	RGCY	7 cut(s)	119, 300, 305, 412, 594, 631, 671
CviQI	GTAC	1 cut(s)	397
DpnI	GATC	1 cut(s)	65
DpnII	GATC	1 cut(s)	63
DrdI	GACNNNNNNGTC	1 cut(s)	447
DseDI	GACNNNNNNGTC	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	543
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	4 cut(s)	102, 491, 530, 585
Eco47I	GGWCC	2 cut(s)	444, 457
Eco53kI	GAGCTC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	306
Esp3I	CGTCTC	2 cut(s)	473, 556
FaeI	CATG	4 cut(s)	278, 421, 658, 667
FaiI	YATR	8 cut(s)	141, 146, 246, 276, 347, 419, 656, 665
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	4 cut(s)	274, 417, 654, 663
FblI	GTMKAC	3 cut(s)	183, 318, 642
Fnu4HI	GCNGC	2 cut(s)	203, 669
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	2 cut(s)	203, 669
FspBI	CTAG	2 cut(s)	57, 206
GluI	GCNGC	2 cut(s)	203, 669
GsuI	CTGGAG	1 cut(s)	638
HaeIII	GGCC	4 cut(s)	119, 300, 412, 671
HapII	CCGG	6 cut(s)	234, 455, 483, 504, 566, 577
Hin1II	CATG	4 cut(s)	278, 421, 658, 667
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	3 cut(s)	83, 257, 335
HpaII	CCGG	6 cut(s)	234, 455, 483, 504, 566, 577
Hpy166II	GTNNAC	3 cut(s)	184, 319, 643
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	4 cut(s)	17, 80, 87, 254
Hpy8I	GTNNAC	3 cut(s)	184, 319, 643
Hpy99I	CGWCG	4 cut(s)	320, 502, 551, 575
HpyAV	CCTTC	3 cut(s)	290, 597, 597
HpyCH4III	ACNGT	3 cut(s)	188, 363, 444
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	5 cut(s)	161, 366, 391, 509, 624
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	4 cut(s)	278, 421, 658, 667
Kzo9I	GATC	1 cut(s)	63
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	57, 206
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	214, 236
MalI	GATC	1 cut(s)	65
MboI	GATC	1 cut(s)	63
MboII	GAAGA	2 cut(s)	65, 530
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	3 cut(s)	96, 262, 510
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	3 cut(s)	53, 470, 474
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	382
MspI	CCGG	6 cut(s)	234, 455, 483, 504, 566, 577
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	617
NdeII	GATC	1 cut(s)	63
NlaIII	CATG	4 cut(s)	278, 421, 658, 667
NmeAIII	GCCGAG	1 cut(s)	326
NspI	RCATGY	1 cut(s)	278
OliI	CACNNNNGTG	1 cut(s)	382
PciI	ACATGT	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	448
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	83, 335
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	204, 670
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
PscI	ACATGT	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspPI	GGNCC	3 cut(s)	410, 444, 457
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PsuI	RGATCY	1 cut(s)	63
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	382
SacI	GAGCTC	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	203, 669
Sau3AI	GATC	1 cut(s)	63
Sau96I	GGNCC	3 cut(s)	410, 444, 457
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	6 cut(s)	114, 596, 608, 618, 633, 642
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	444, 457
SmiMI	CAYNNNNRTG	1 cut(s)	382
Sse9I	AATT	3 cut(s)	96, 262, 510
SsiI	CCGC	1 cut(s)	668
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	57, 206
SstI	GAGCTC	1 cut(s)	633
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	188, 363, 444
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	2 cut(s)	86, 318
TasI	AATT	3 cut(s)	96, 262, 510
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	83, 335
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	17, 65, 161
VpaK11BI	GGWCC	2 cut(s)	444, 457
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	278
XmiI	GTMKAC	3 cut(s)	183, 318, 642
XspI	CTAG	2 cut(s)	57, 206
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.