Rmu_sc0000594.1_g000018

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000594.1
N/A
Physical Location & Seq
Reverse (-)
52020 .. 58762
6743 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ctgcaaccatgcgtgcctcgcagcaccacccgcccagcgaccacgcgaacgacgagttgtgagtcgcgcacgcgattgggaacctctaccgcgccacagctttccattaagcccttcatcaatggcagagcctccgataagctcgctacctgcgtcacccaacccatcgatatgatcaaggtgagaattcaattgggtcagggatcagctggacaagttgccaggaccatgatcaaggaggagggtttcggttcattgtataaggtgagaattcaattgggtcagggatcagctggacaagttgccaggaccatgatcaaggaggagggttttggttcattgtataaggctaagacggtggcccgaatcgggcagggaggaggctggaggcatcccagacctcttctgggcagcgatcaaggtcggaggagatcgaggttgcagatttctaggcagcgacctcacctgcaactgcaggttttgggcagcgctacaaccacgttgccggtgactccactcgactgcagattggtccatccgacaagaggggccacgccgttgcggcctgagcagggctgcagcttcgacgtccgtactttagcgaaagaacctagttttgcaacaagcgctaagtcttttaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

214

Amino Acids

23.26

Weight (kDa)

11.28

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 37 - 88 3.5e-08 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 474
AatII GACGTC 1 cut(s) 591
Acc36I ACCTGC 3 cut(s) 158, 466, 474
AccII CGCG 4 cut(s) 46, 67, 73, 92
AciI CCGC 3 cut(s) 31, 90, 562
AclWI GGATC 2 cut(s) 211, 295
AcsI RAATTY 2 cut(s) 186, 270
AcyI GRCGYC 1 cut(s) 588
AfaI GTAC 1 cut(s) 595
AfeI AGCGCT 2 cut(s) 490, 628
AfiI CCNNNNNNNGG 4 cut(s) 369, 407, 545, 572
AgsI TTSAA 2 cut(s) 191, 275
AjnI CCWGG 2 cut(s) 221, 305
AluBI AGCT 5 cut(s) 100, 142, 209, 293, 582
AluI AGCT 5 cut(s) 100, 142, 209, 293, 582
AlwI GGATC 2 cut(s) 211, 295
Aor51HI AGCGCT 2 cut(s) 490, 628
AoxI GGCC 3 cut(s) 360, 549, 563
ApeKI GCWGC 6 cut(s) 21, 411, 454, 486, 576, 579
ApoI RAATTY 2 cut(s) 186, 270
AspLEI GCGC 4 cut(s) 69, 94, 491, 629
AspS9I GGNCC 5 cut(s) 225, 309, 361, 532, 549
AsuHPI GGTGA 5 cut(s) 148, 193, 277, 455, 520
AvaII GGWCC 3 cut(s) 225, 309, 532
BbvI GCAGC 6 cut(s) 33, 423, 466, 498, 563, 591
BccI CCATC 2 cut(s) 173, 543
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 223, 307
BclI TGATCA 3 cut(s) 174, 231, 315
BfaI CTAG 2 cut(s) 450, 612
BfmI CTRYAG 3 cut(s) 473, 523, 577
BfoI RGCGCY 2 cut(s) 492, 630
BfuAI ACCTGC 3 cut(s) 158, 466, 474
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 7 cut(s) 22, 412, 455, 487, 563, 577, 580
BlsI GCNGC 7 cut(s) 23, 413, 456, 488, 564, 578, 581
Bme1390I CCNGG 2 cut(s) 223, 307
Bme18I GGWCC 3 cut(s) 225, 309, 532
BmgT120I GGNCC 5 cut(s) 225, 309, 361, 532, 549
BmiI GGNNCC 2 cut(s) 82, 550
BmrFI CCNGG 2 cut(s) 223, 307
BmsI GCATC 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 567
Bsa29I ATCGAT 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 588
Bsc4I CCNNNNNNNGG 4 cut(s) 369, 407, 545, 572
Bse118I RCCGGY 1 cut(s) 505
BseBI CCWGG 2 cut(s) 223, 307
BseCI ATCGAT 1 cut(s) 168
BseGI GGATG 2 cut(s) 391, 535
BseLI CCNNNNNNNGG 4 cut(s) 369, 407, 545, 572
BseMII CTCAG 1 cut(s) 558
BseRI GAGGAG 4 cut(s) 254, 338, 393, 442
BseXI GCAGC 6 cut(s) 33, 423, 466, 498, 563, 591
BseYI CCCAGC 1 cut(s) 34
Bsh1236I CGCG 4 cut(s) 46, 67, 73, 92
BshFI GGCC 3 cut(s) 362, 551, 565
BshVI ATCGAT 1 cut(s) 168
BsiSI CCGG 1 cut(s) 506
BslI CCNNNNNNNGG 4 cut(s) 369, 407, 545, 572
BsnI GGCC 3 cut(s) 362, 551, 565
Bsp143I GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
BspACI CCGC 3 cut(s) 31, 90, 562
BspANI GGCC 3 cut(s) 362, 551, 565
BspCNI CTCAG 1 cut(s) 559
BspDI ATCGAT 1 cut(s) 168
BspFNI CGCG 4 cut(s) 46, 67, 73, 92
BspLI GGNNCC 2 cut(s) 82, 550
BspMAI CTGCAG 3 cut(s) 477, 527, 581
BspMI ACCTGC 3 cut(s) 158, 466, 474
BspPI GGATC 2 cut(s) 211, 295
BsrFI RCCGGY 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 505
BssMI GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
BssNI GRCGYC 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 223, 307
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 14, 71, 144
BstDEI CTNAG 3 cut(s) 351, 567, 630
BstF5I GGATG 2 cut(s) 391, 535
BstFNI CGCG 4 cut(s) 46, 67, 73, 92
BstH2I RGCGCY 2 cut(s) 492, 630
BstHHI GCGC 4 cut(s) 69, 94, 491, 629
BstKTI GATC 7 cut(s) 177, 206, 234, 290, 318, 418, 434
BstMBI GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
BstMWI GCNNNNNNNGC 5 cut(s) 18, 30, 562, 568, 626
BstNI CCWGG 2 cut(s) 223, 307
BstSCI CCNGG 2 cut(s) 221, 305
BstSFI CTRYAG 3 cut(s) 473, 523, 577
BstUI CGCG 4 cut(s) 46, 67, 73, 92
BstV1I GCAGC 6 cut(s) 33, 423, 466, 498, 563, 591
Bsu15I ATCGAT 1 cut(s) 168
BsuRI GGCC 3 cut(s) 362, 551, 565
BsuTUI ATCGAT 1 cut(s) 168
BtsCI GGATG 2 cut(s) 391, 535
BveI ACCTGC 3 cut(s) 158, 466, 474
Cac8I GCNNGC 3 cut(s) 14, 71, 144
CfoI GCGC 4 cut(s) 69, 94, 491, 629
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 5 cut(s) 225, 309, 361, 532, 549
ClaI ATCGAT 1 cut(s) 168
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 594
CviAII CATG 3 cut(s) 9, 229, 313
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 3 cut(s) 351, 567, 630
DpnI GATC 7 cut(s) 176, 205, 233, 289, 317, 417, 433
DpnII GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco47I GGWCC 3 cut(s) 225, 309, 532
Eco47III AGCGCT 2 cut(s) 490, 628
EcoRI GAATTC 2 cut(s) 186, 270
EcoRII CCWGG 2 cut(s) 221, 305
FaeI CATG 3 cut(s) 12, 232, 316
FaiI YATR 6 cut(s) 10, 173, 230, 261, 314, 345
FatI CATG 3 cut(s) 8, 228, 312
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 3 cut(s) 174, 231, 315
Fnu4HI GCNGC 7 cut(s) 22, 412, 455, 487, 563, 577, 580
FokI GGATG 2 cut(s) 378, 522
Fsp4HI GCNGC 7 cut(s) 22, 412, 455, 487, 563, 577, 580
FspBI CTAG 2 cut(s) 450, 612
GlaI GCGC 4 cut(s) 68, 93, 490, 628
GluI GCNGC 7 cut(s) 22, 412, 455, 487, 563, 577, 580
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 1 cut(s) 406
HaeII RGCGCY 2 cut(s) 492, 630
HaeIII GGCC 3 cut(s) 362, 551, 565
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 142
HhaI GCGC 4 cut(s) 69, 94, 491, 629
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 3 cut(s) 12, 232, 316
Hin6I GCGC 4 cut(s) 67, 92, 489, 627
HinP1I GCGC 4 cut(s) 67, 92, 489, 627
HinfI GANTC 3 cut(s) 62, 366, 511
HpaII CCGG 1 cut(s) 506
HphI GGTGA 5 cut(s) 148, 193, 277, 455, 520
Hpy188I TCNGA 3 cut(s) 136, 426, 540
Hpy99I CGWCG 2 cut(s) 55, 590
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 500, 588
HpyCH4V TGCA 7 cut(s) 4, 442, 469, 475, 525, 579, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 30, 562, 568, 626
HpyF3I CTNAG 3 cut(s) 351, 567, 630
HpySE526I ACGT 2 cut(s) 500, 588
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 3 cut(s) 12, 232, 316
HspAI GCGC 4 cut(s) 67, 92, 489, 627
Ksp22I TGATCA 3 cut(s) 174, 231, 315
Kzo9I GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
Lsp1109I GCAGC 6 cut(s) 33, 423, 466, 498, 563, 591
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 450, 612
MaeII ACGT 2 cut(s) 500, 588
MaeIII GTNAC 2 cut(s) 154, 508
MalI GATC 7 cut(s) 176, 205, 233, 289, 317, 417, 433
MboI GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
MboII GAAGA 1 cut(s) 395
MfeI CAATTG 2 cut(s) 191, 275
MluCI AATT 4 cut(s) 186, 191, 270, 275
MlyI GAGTC 2 cut(s) 71, 505
MmeI TCCRAC 2 cut(s) 404, 563
MseI TTAA 2 cut(s) 108, 639
MslI CAYNNNNRTG 1 cut(s) 170
MspA1I CMGCKG 2 cut(s) 209, 293
MspI CCGG 1 cut(s) 506
MspR9I CCNGG 2 cut(s) 223, 307
MunI CAATTG 2 cut(s) 191, 275
MvaI CCWGG 2 cut(s) 223, 307
MvnI CGCG 4 cut(s) 46, 67, 73, 92
MwoI GCNNNNNNNGC 5 cut(s) 18, 30, 562, 568, 626
NdeII GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
NlaIII CATG 3 cut(s) 12, 232, 316
NlaIV GGNNCC 2 cut(s) 82, 550
NmuCI GTSAC 2 cut(s) 154, 508
PaqCI CACCTGC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 150
PfeI GAWTC 1 cut(s) 366
PkrI GCNGC 7 cut(s) 23, 413, 456, 488, 564, 578, 581
PleI GAGTC 2 cut(s) 70, 505
PpsI GAGTC 2 cut(s) 70, 505
Psp6I CCWGG 2 cut(s) 221, 305
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 221, 305
PspN4I GGNNCC 2 cut(s) 82, 550
PspPI GGNCC 5 cut(s) 225, 309, 361, 532, 549
PstI CTGCAG 3 cut(s) 477, 527, 581
PvuII CAGCTG 2 cut(s) 209, 293
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 2 cut(s) 108, 639
SatI GCNGC 7 cut(s) 22, 412, 455, 487, 563, 577, 580
Sau3AI GATC 7 cut(s) 174, 203, 231, 287, 315, 415, 431
Sau96I GGNCC 5 cut(s) 225, 309, 361, 532, 549
SchI GAGTC 2 cut(s) 71, 505
ScrFI CCNGG 2 cut(s) 223, 307
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 3 cut(s) 473, 523, 577
SinI GGWCC 3 cut(s) 225, 309, 532
SmiMI CAYNNNNRTG 1 cut(s) 170
Sse9I AATT 4 cut(s) 186, 191, 270, 275
SsiI CCGC 3 cut(s) 31, 90, 562
SspMI CTAG 2 cut(s) 450, 612
StyD4I CCNGG 2 cut(s) 221, 305
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 2 cut(s) 503, 591
TaqI TCGA 4 cut(s) 168, 434, 519, 585
TasI AATT 4 cut(s) 186, 191, 270, 275
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 108, 639
Tru9I TTAA 2 cut(s) 108, 639
TseFI GTSAC 2 cut(s) 154, 508
TseI GCWGC 6 cut(s) 21, 411, 454, 486, 576, 579
Tsp45I GTSAC 2 cut(s) 154, 508
TspDTI ATGAA 3 cut(s) 106, 243, 327
TspGWI ACGGA 1 cut(s) 581
VpaK11BI GGWCC 3 cut(s) 225, 309, 532
XapI RAATTY 2 cut(s) 186, 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 2 cut(s) 450, 612
ZraI GACGTC 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.