Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000595.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

238549 .. 242144

Gene Structure 3596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgacgacagagattctcgcggcactaaaggttcaagaggtgaatgaggcgggccctcttcctcttggtgaccatgtaccagatattgacccgacagctcgagaggattctgtttgtaccgaggaggcggctacaaacaatgagggtcctattggcgggacagtcgccccagagatggaaaatgatactgacggtggtggttccctccaagtctcgcaaataaatgagaaaaccgtcgaagccgagggccctgtgcttaaatctgctctacttgcccatggtgagccgcgagttgagtttccagattctcctgcggctgaagggatagaccaacctattgaagatgaagaaactgaggaagctatccacccttttgcattggtagttcgtgatcctgtggcacctctgccgcctcctcctcctaccagattcgagagattgatgagggtgttggaggagctttacgatgacaagggagttaagtcccccactgtagagcaggttcagaggatcactctccagctaaaatggtatggacagatcgagaacaagaacgccttttattggttccagaatcaaagtgctctggagaagctgaagaacaataagctcacttcggatgttcaagtgcccaagcaaagatcagggcttgttggtggatccattaatctcaattttgggtcaactagttctgctggtgttggtggatccatcatggaacaacgaggagaagatcaccaggaggttaaaacccttccactgtttcccatgcacagtgaggacatctttggcaacatgaagactacttccaacgaaggtggtggtcacggtggtgactcttacatttcccttgagctcagcctttcctgcgagggcaaagctaagatcagggcttgttggtggatccattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

303

Amino Acids

32.95

Weight (kDa)

4.6

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	400
AccII	CGCG	2 cut(s)	20, 289
AciI	CCGC	7 cut(s)	20, 50, 128, 156, 287, 314, 410
AclWI	GGATC	8 cut(s)	386, 518, 654, 667, 702, 715, 898, 911
AcuI	CTGAAG	2 cut(s)	339, 617
AfaI	GTAC	2 cut(s)	78, 118
AfiI	CCNNNNNNNGG	3 cut(s)	155, 175, 564
AgsI	TTSAA	3 cut(s)	35, 341, 626
AhlI	ACTAGT	1 cut(s)	686
AjnI	CCWGG	1 cut(s)	738
AleI	CACNNNNGTG	1 cut(s)	831
AluBI	AGCT	8 cut(s)	98, 362, 460, 523, 595, 610, 856, 881
AluI	AGCT	8 cut(s)	98, 362, 460, 523, 595, 610, 856, 881
Alw21I	GWGCWC	2 cut(s)	586, 858
Alw26I	GTCTC	1 cut(s)	217
AlwI	GGATC	8 cut(s)	386, 518, 654, 667, 702, 715, 898, 911
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	52, 247
ApaI	GGGCCC	2 cut(s)	56, 251
AseI	ATTAAT	1 cut(s)	666
AspS9I	GGNCC	5 cut(s)	52, 53, 146, 247, 248
AsuHPI	GGTGA	5 cut(s)	52, 80, 293, 728, 845
AvaI	CYCGRG	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	146
BaeGI	GKGCMC	3 cut(s)	56, 251, 633
BamHI	GGATCC	3 cut(s)	659, 707, 903
BanI	GGYRCC	1 cut(s)	400
BanII	GRGCYC	3 cut(s)	56, 251, 858
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	586, 858
BccI	CCATC	2 cut(s)	169, 719
BciT130I	CCWGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	217
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	1 cut(s)	687
BfmI	CTRYAG	1 cut(s)	492
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	5 cut(s)	21, 129, 287, 315, 410
BlpI	GCTNAGC	1 cut(s)	857
BlsI	GCNGC	5 cut(s)	22, 130, 288, 316, 411
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	99
BmgT120I	GGNCC	5 cut(s)	52, 53, 146, 247, 248
BmiI	GGNNCC	9 cut(s)	54, 147, 202, 249, 402, 569, 661, 709, 905
BmrFI	CCNGG	1 cut(s)	740
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	499, 531
BpmI	CTGGAG	2 cut(s)	503, 608
Bpu1102I	GCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	120, 243, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 175, 564
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	3 cut(s)	120, 243, 277
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	3 cut(s)	155, 175, 564
BseMII	CTCAG	2 cut(s)	345, 871
BseRI	GAGGAG	5 cut(s)	137, 405, 408, 470, 741
BseSI	GKGCMC	3 cut(s)	56, 251, 633
Bsh1236I	CGCG	2 cut(s)	20, 289
BshFI	GGCC	2 cut(s)	54, 249
BshNI	GGYRCC	1 cut(s)	400
BsiHKAI	GWGCWC	2 cut(s)	586, 858
BsiHKCI	CYCGRG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	172, 469
BslI	CCNNNNNNNGG	3 cut(s)	155, 175, 564
BsmAI	GTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	172, 469
BsnI	GGCC	2 cut(s)	54, 249
BsoBI	CYCGRG	1 cut(s)	99
Bsp120I	GGGCCC	2 cut(s)	52, 247
Bsp1286I	GDGCHC	5 cut(s)	56, 251, 586, 633, 858
Bsp143I	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
Bsp1720I	GCTNAGC	1 cut(s)	857
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	7 cut(s)	20, 50, 128, 156, 287, 314, 410
BspANI	GGCC	2 cut(s)	54, 249
BspCNI	CTCAG	2 cut(s)	346, 870
BspFNI	CGCG	2 cut(s)	20, 289
BspLI	GGNNCC	9 cut(s)	54, 147, 202, 249, 402, 569, 661, 709, 905
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	8 cut(s)	386, 518, 654, 667, 702, 715, 898, 911
BspT107I	GGYRCC	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	120, 243, 277
BssMI	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	7 cut(s)	163, 194, 235, 493, 762, 776, 830
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	354, 857, 882
BstDSI	CCRYGG	1 cut(s)	277
BstEII	GGTNACC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	2 cut(s)	20, 289
BstKTI	GATC	9 cut(s)	394, 513, 543, 644, 662, 710, 736, 888, 906
BstMAI	GTCTC	1 cut(s)	217
BstMBI	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 867
BstNI	CCWGG	1 cut(s)	740
BstPI	GGTNACC	1 cut(s)	68
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	3 cut(s)	56, 251, 633
BstUI	CGCG	2 cut(s)	20, 289
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	3 cut(s)	659, 707, 903
BstYI	RGATCY	3 cut(s)	659, 707, 903
BsuRI	GGCC	2 cut(s)	54, 249
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	3 cut(s)	489, 758, 781
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	52
Cfr13I	GGNCC	5 cut(s)	52, 53, 146, 247, 248
Csp6I	GTAC	2 cut(s)	77, 117
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	5 cut(s)	74, 278, 715, 769, 796
CviQI	GTAC	2 cut(s)	77, 117
DdeI	CTNAG	3 cut(s)	354, 857, 882
DpnI	GATC	9 cut(s)	393, 512, 542, 643, 661, 709, 735, 887, 905
DpnII	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	3 cut(s)	56, 251, 858
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	2 cut(s)	339, 617
Eco88I	CYCGRG	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	4 cut(s)	53, 146, 247, 248
EcoO65I	GGTNACC	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	3 cut(s)	56, 251, 858
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	5 cut(s)	77, 281, 718, 772, 799
FaiI	YATR	6 cut(s)	75, 279, 534, 716, 770, 797
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FaqI	GGGAC	2 cut(s)	172, 469
FatI	CATG	5 cut(s)	73, 277, 714, 768, 795
FauI	CCCGC	2 cut(s)	43, 149
Fnu4HI	GCNGC	5 cut(s)	21, 129, 287, 315, 410
FokI	GGATG	1 cut(s)	632
FriOI	GRGCYC	3 cut(s)	56, 251, 858
Fsp4HI	GCNGC	5 cut(s)	21, 129, 287, 315, 410
FspBI	CTAG	1 cut(s)	687
GluI	GCNGC	5 cut(s)	21, 129, 287, 315, 410
GsuI	CTGGAG	2 cut(s)	503, 608
HaeIII	GGCC	2 cut(s)	54, 249
Hin1II	CATG	5 cut(s)	77, 281, 718, 772, 799
HincII	GTYRAC	1 cut(s)	684
HindII	GTYRAC	1 cut(s)	684
HinfI	GANTC	6 cut(s)	13, 107, 305, 429, 574, 836
HphI	GGTGA	5 cut(s)	52, 80, 293, 728, 845
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	2 cut(s)	507, 619
Hpy188III	TCNNGA	8 cut(s)	35, 101, 302, 389, 433, 544, 571, 587
Hpy8I	GTNNAC	1 cut(s)	684
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	314, 764, 809
HpyCH4III	ACNGT	7 cut(s)	163, 194, 235, 493, 762, 776, 830
HpyCH4V	TGCA	2 cut(s)	377, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 867
HpyF3I	CTNAG	3 cut(s)	354, 857, 882
Hsp92II	CATG	5 cut(s)	77, 281, 718, 772, 799
Kzo9I	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
LmnI	GCTCC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	687
MaeIII	GTNAC	3 cut(s)	68, 824, 833
MalI	GATC	9 cut(s)	393, 512, 542, 643, 661, 709, 735, 887, 905
MboI	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
MboII	GAAGA	6 cut(s)	50, 353, 359, 610, 743, 811
MflI	RGATCY	3 cut(s)	659, 707, 903
MhlI	GDGCHC	5 cut(s)	56, 251, 586, 633, 858
MluCI	AATT	1 cut(s)	673
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	2 cut(s)	432, 834
MseI	TTAA	5 cut(s)	258, 480, 666, 747, 910
MslI	CAYNNNNRTG	1 cut(s)	831
MspR9I	CCNGG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	740
MvnI	CGCG	2 cut(s)	20, 289
MwoI	GCNNNNNNNGC	2 cut(s)	272, 867
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
NlaIII	CATG	5 cut(s)	77, 281, 718, 772, 799
NlaIV	GGNNCC	9 cut(s)	54, 147, 202, 249, 402, 569, 661, 709, 905
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	68, 824, 833
OliI	CACNNNNGTG	1 cut(s)	831
PaeR7I	CTCGAG	1 cut(s)	99
PfeI	GAWTC	5 cut(s)	13, 107, 305, 429, 574
PkrI	GCNGC	5 cut(s)	22, 130, 288, 316, 411
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PpuMI	RGGWCCY	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	666
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	738
PspEI	GGTNACC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	9 cut(s)	54, 147, 202, 249, 402, 569, 661, 709, 905
PspOMI	GGGCCC	2 cut(s)	52, 247
PspPI	GGNCC	5 cut(s)	52, 53, 146, 247, 248
PspPPI	RGGWCCY	1 cut(s)	146
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PsuI	RGATCY	3 cut(s)	659, 707, 903
RsaI	GTAC	2 cut(s)	78, 118
RsaNI	GTAC	2 cut(s)	77, 117
RseI	CAYNNNNRTG	1 cut(s)	831
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	5 cut(s)	258, 480, 666, 747, 910
SatI	GCNGC	5 cut(s)	21, 129, 287, 315, 410
Sau3AI	GATC	9 cut(s)	391, 510, 540, 641, 659, 707, 733, 885, 903
Sau96I	GGNCC	5 cut(s)	52, 53, 146, 247, 248
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	5 cut(s)	56, 251, 586, 633, 858
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	99, 851
SmoI	CTYRAG	2 cut(s)	99, 851
SpeI	ACTAGT	1 cut(s)	686
Sse9I	AATT	1 cut(s)	673
SsiI	CCGC	7 cut(s)	20, 50, 128, 156, 287, 314, 410
SspMI	CTAG	1 cut(s)	687
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	7 cut(s)	163, 194, 235, 493, 762, 776, 830
TaqI	TCGA	4 cut(s)	100, 237, 432, 543
TasI	AATT	1 cut(s)	673
TauI	GCSGC	5 cut(s)	23, 131, 289, 317, 412
TfiI	GAWTC	5 cut(s)	13, 107, 305, 429, 574
Tru1I	TTAA	5 cut(s)	258, 480, 666, 747, 910
Tru9I	TTAA	5 cut(s)	258, 480, 666, 747, 910
TscAI	CASTG	3 cut(s)	496, 765, 781
TseFI	GTSAC	3 cut(s)	68, 824, 833
Tsp45I	GTSAC	3 cut(s)	68, 824, 833
TspDTI	ATGAA	2 cut(s)	360, 812
TspRI	CASTG	3 cut(s)	496, 765, 781
VpaK11BI	GGWCC	1 cut(s)	146
VspI	ATTAAT	1 cut(s)	666
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.