Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000596.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

395836 .. 398902

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggcagtgtcaacgcagcttcactcacttaccactcttgcttcattgactcaccgcactaaggtcaagtttaacagcgcctgctgcgcagctctgtttcccaatgcaaagcaaacaagcccatccacgctttgcagtgctgtgcagagtgcacagtccactgtttctgagagatcaaacccaccatttacttccttcaatgagttgattgagtccttgattgataaggtggatttgtcggagtccgaagccgaagcttcattggagttcttgctgagtgatgctagtgaggctttgattagcgcctttcttgtgttgttgagagccaaaggagagacttatgaagaaggggtcgcgagatgtgttaatgaagtagggtttggttttatgatggcaccaaagtatcatccagcaatgaatgtcgttcgtcctgtaaggaaaaagctaaaagtaaagactgtattcaacattttgggacctatgttgaatccagctagagttccttttgctgttgttggtgtatacaaggaagaattagtcctaaagatggctaaagcattacaaagctttggcatgaagagagcattggttgttcactcgaagggcttggacaaaatgagtccccttggacctggacatatccttaatgtgactcctaataagattgagaagttctcctttgatccattggactttggaattcctcgatgcactatagatgatttgcgaggtggagatccagagtataacgctgaggcattaaagcgcgtattatcaggagagaaaggttccatggcagatgcgtttgtaagtttccttgagcaatatatcaatgtcattgcttcttatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004048 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016053 GO:0016740 GO:0016757 GO:0016763 GO:0018130 GO:0019438 GO:0019752 GO:0031967 GO:0031975 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Glycos_trans_3N Glycos_transf_3

Protein Analysis

284

Amino Acids

30.97

Weight (kDa)

8.2

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	68 - 116	8.1e-10	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	113 - 268	8.1e-52	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	522
AccII	CGCG	2 cut(s)	356, 768
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	677, 731
AcsI	RAATTY	1 cut(s)	699
AfiI	CCNNNNNNNGG	2 cut(s)	61, 547
AgsI	TTSAA	3 cut(s)	199, 466, 487
AjnI	CCWGG	1 cut(s)	631
AjuI	GAANNNNNNNTTGG	4 cut(s)	363, 395, 569, 601
AluBI	AGCT	6 cut(s)	19, 92, 257, 445, 494, 567
AluI	AGCT	6 cut(s)	19, 92, 257, 445, 494, 567
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	329
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	677, 731
AlwNI	CAGNNNCTG	1 cut(s)	81
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	16, 84, 89
ApoI	RAATTY	1 cut(s)	699
AspLEI	GCGC	4 cut(s)	80, 89, 305, 768
AspS9I	GGNCC	2 cut(s)	476, 629
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	2 cut(s)	476, 629
BaeGI	GKGCMC	1 cut(s)	154
BaeI	ACNNNNGTAYC	2 cut(s)	386, 419
BanI	GGYRCC	1 cut(s)	394
Bbv12I	GWGCWC	1 cut(s)	154
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	28, 71, 101
BccI	CCATC	3 cut(s)	130, 385, 541
BciT130I	CCWGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	285, 495
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	2 cut(s)	81, 306
BisI	GCNGC	3 cut(s)	17, 85, 90
BlsI	GCNGC	3 cut(s)	18, 86, 91
Bme1390I	CCNGG	1 cut(s)	633
Bme18I	GGWCC	2 cut(s)	476, 629
BmgT120I	GGNCC	2 cut(s)	476, 629
BmiI	GGNNCC	3 cut(s)	396, 477, 790
BmrFI	CCNGG	1 cut(s)	633
BmsI	GCATC	3 cut(s)	271, 698, 790
BplI	GAGNNNNNCTC	2 cut(s)	659, 691
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	625, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 547
Bse3DI	GCAATG	2 cut(s)	420, 837
BseBI	CCWGG	1 cut(s)	633
BseDI	CCNNGG	2 cut(s)	625, 792
BseGI	GGATG	2 cut(s)	122, 406
BseLI	CCNNNNNNNGG	2 cut(s)	61, 547
BseMI	GCAATG	2 cut(s)	420, 837
BseMII	CTCAG	3 cut(s)	159, 266, 744
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	28, 71, 101
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	356, 768
BshNI	GGYRCC	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	154
BslFI	GGGAC	2 cut(s)	489, 606
BslI	CCNNNNNNNGG	2 cut(s)	61, 547
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	489, 606
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	173, 682, 736
Bsp19I	CCATGG	1 cut(s)	792
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	1 cut(s)	55
BspCNI	CTCAG	3 cut(s)	160, 267, 745
BspFNI	CGCG	2 cut(s)	356, 768
BspLI	GGNNCC	3 cut(s)	396, 477, 790
BspPI	GGATC	2 cut(s)	677, 731
BspT107I	GGYRCC	1 cut(s)	394
BsrDI	GCAATG	2 cut(s)	420, 837
BssECI	CCNNGG	2 cut(s)	625, 792
BssMI	GATC	3 cut(s)	173, 682, 736
BssNAI	GTATAC	1 cut(s)	523
BssT1I	CCWWGG	2 cut(s)	625, 792
Bst1107I	GTATAC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	633
Bst4CI	ACNGT	3 cut(s)	156, 163, 460
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	4 cut(s)	60, 168, 275, 753
BstDSI	CCRYGG	1 cut(s)	792
BstF5I	GGATG	2 cut(s)	122, 406
BstFNI	CGCG	2 cut(s)	356, 768
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	4 cut(s)	80, 89, 305, 768
BstKTI	GATC	3 cut(s)	176, 685, 739
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	3 cut(s)	173, 682, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 86, 290
BstNI	CCWGG	1 cut(s)	633
BstSCI	CCNGG	1 cut(s)	631
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	2 cut(s)	356, 768
BstV1I	GCAGC	3 cut(s)	28, 71, 101
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BstZ17I	GTATAC	1 cut(s)	523
BtgI	CCRYGG	1 cut(s)	792
BtsCI	GGATG	2 cut(s)	122, 406
BtsI	GCAGTG	2 cut(s)	12, 142
BtsIMutI	CAGTG	3 cut(s)	12, 142, 159
BtuMI	TCGCGA	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	81
CfoI	GCGC	4 cut(s)	80, 89, 305, 768
Cfr13I	GGNCC	2 cut(s)	476, 629
CviAII	CATG	2 cut(s)	574, 793
DdeI	CTNAG	4 cut(s)	60, 168, 275, 753
DpnI	GATC	3 cut(s)	175, 684, 738
DpnII	GATC	3 cut(s)	173, 682, 736
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco130I	CCWWGG	2 cut(s)	625, 792
Eco47I	GGWCC	2 cut(s)	476, 629
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	625, 792
ErhI	CCWWGG	2 cut(s)	625, 792
FaeI	CATG	2 cut(s)	577, 796
FalI	AAGNNNNNCTT	2 cut(s)	662, 694
FaqI	GGGAC	2 cut(s)	489, 606
FatI	CATG	2 cut(s)	573, 792
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	3 cut(s)	17, 85, 90
FokI	GGATG	2 cut(s)	109, 393
Fsp4HI	GCNGC	3 cut(s)	17, 85, 90
FspBI	CTAG	2 cut(s)	285, 495
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	4 cut(s)	79, 88, 304, 767
GluI	GCNGC	3 cut(s)	17, 85, 90
HaeII	RGCGCY	2 cut(s)	81, 306
HhaI	GCGC	4 cut(s)	80, 89, 305, 768
Hin1II	CATG	2 cut(s)	577, 796
Hin6I	GCGC	4 cut(s)	78, 87, 303, 766
HinP1I	GCGC	4 cut(s)	78, 87, 303, 766
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	255, 565
HinfI	GANTC	6 cut(s)	49, 212, 242, 487, 619, 652
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	5 cut(s)	12, 152, 159, 523, 595
Hpy188I	TCNGA	3 cut(s)	169, 241, 247
Hpy188III	TCNNGA	3 cut(s)	355, 740, 777
Hpy8I	GTNNAC	5 cut(s)	12, 152, 159, 523, 595
HpyAV	CCTTC	3 cut(s)	205, 341, 595
HpyCH4III	ACNGT	3 cut(s)	156, 163, 460
HpyCH4V	TGCA	5 cut(s)	107, 135, 145, 152, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 86, 290
HpyF3I	CTNAG	4 cut(s)	60, 168, 275, 753
Hsp92II	CATG	2 cut(s)	577, 796
HspAI	GCGC	4 cut(s)	78, 87, 303, 766
Kzo9I	GATC	3 cut(s)	173, 682, 736
LpnPI	CCDG	8 cut(s)	94, 423, 444, 504, 618, 645, 753, 762
Lsp1109I	GCAGC	3 cut(s)	28, 71, 101
LweI	GCATC	3 cut(s)	271, 698, 790
MaeI	CTAG	2 cut(s)	285, 495
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	3 cut(s)	175, 684, 738
MboI	GATC	3 cut(s)	173, 682, 736
MboII	GAAGA	3 cut(s)	356, 542, 589
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	533, 699
MlyI	GAGTC	5 cut(s)	43, 221, 251, 628, 646
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	283, 714, 722, 748
MseI	TTAA	4 cut(s)	72, 366, 645, 761
MspR9I	CCNGG	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	633
MvnI	CGCG	2 cut(s)	356, 768
MwoI	GCNNNNNNNGC	3 cut(s)	84, 86, 290
NcoI	CCATGG	1 cut(s)	792
NdeII	GATC	3 cut(s)	173, 682, 736
NlaIII	CATG	2 cut(s)	577, 796
NlaIV	GGNNCC	3 cut(s)	396, 477, 790
NmuCI	GTSAC	1 cut(s)	649
NruI	TCGCGA	1 cut(s)	356
NsbI	TGCGCA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	18, 86, 91
PleI	GAGTC	5 cut(s)	43, 220, 250, 627, 646
PpsI	GAGTC	5 cut(s)	43, 220, 250, 627, 646
PpuMI	RGGWCCY	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	631
PspN4I	GGNNCC	3 cut(s)	396, 477, 790
PspPI	GGNCC	2 cut(s)	476, 629
PspPPI	RGGWCCY	1 cut(s)	476
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	736
RruI	TCGCGA	1 cut(s)	356
SaqAI	TTAA	4 cut(s)	72, 366, 645, 761
SatI	GCNGC	3 cut(s)	17, 85, 90
Sau3AI	GATC	3 cut(s)	173, 682, 736
Sau96I	GGNCC	2 cut(s)	476, 629
SchI	GAGTC	5 cut(s)	43, 221, 251, 628, 646
ScrFI	CCNGG	1 cut(s)	633
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	3 cut(s)	271, 698, 790
SfcI	CTRYAG	1 cut(s)	714
SinI	GGWCC	2 cut(s)	476, 629
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	2 cut(s)	533, 699
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	285, 495
StyD4I	CCNGG	1 cut(s)	631
StyI	CCWWGG	2 cut(s)	625, 792
TaaI	ACNGT	3 cut(s)	156, 163, 460
TaqI	TCGA	2 cut(s)	599, 706
TasI	AATT	2 cut(s)	533, 699
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	72, 366, 645, 761
Tru9I	TTAA	4 cut(s)	72, 366, 645, 761
TscAI	CASTG	3 cut(s)	12, 142, 166
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	3 cut(s)	16, 84, 89
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	6 cut(s)	33, 249, 357, 384, 431, 590
TspRI	CASTG	3 cut(s)	12, 142, 166
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	2 cut(s)	476, 629
XapI	RAATTY	1 cut(s)	699
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	285, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.