Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000605.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

132360 .. 134485

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

atgcccaacactcacactccgcttgtttatttctacaagacaaacaacatcgctggtgcaggcgaggacaacaatatctttgacatgcgcgtgtcgaaggacgcgctcagcaaggccctcgtgcccttttacgctttggctggccgcctacggcagaaaaaggacgagggagagaatgaccgtatcgaaatcgattgcaatgcagagggggacttgttttctgtggccgatagcagtgcttgcattagtgactatggtgattttgcacccactcctgaatttgggagagggctcatccccatcgttgattattccagtgggatatattcttttcccttgttgctggttcagatcacatacttgaaatgtacgtggtggagtggcacttggacaatacttcgtgcccgagacccaccccagcctttacctgaccacaatcacgacattgcattccctcctccgaataagcatgagagcactgcagcaacaacggttacaaaatttagatttacatgggagcagctcaatgtcttgaaagctatgtcaaccatgactaaagcgaatggcgatgatatgaacactttaccagtcaagtttaccacatttgaggtgtttgcaggtcatagccacagcaatagccttagtaggggatctcatatcgaaaccaataggcagcgtcatcaggaactgtcgatccttgctcatgggactcatgtaaggtgtcctaatcttgggataaatagctggtgtatattgcccatctatgatgctgattttggctggggtataccaatttccgttgggcgttctggaattcgaagtgaagggaagggctacatggtacctagtgcaactgatgatgggacagggcgctctggcgtcgttatcctgacaaaggaggatgagacttcgatcttgggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010252 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019222 GO:0019438 GO:0019748 GO:0042592 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0047172 GO:0047205 GO:0048518 GO:0048878 GO:0050734 GO:0050737 GO:0050789 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

307

Amino Acids

33.93

Weight (kDa)

5.79

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 123	6.3e-19	Transferase family
Transferase	PF02458	190 - 301	4.2e-09	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	1 cut(s)	841
AccI	GTMKAC	1 cut(s)	787
AccII	CGCG	2 cut(s)	90, 104
AciI	CCGC	2 cut(s)	20, 145
AclWI	GGATC	2 cut(s)	658, 688
AcoI	YGGCCR	2 cut(s)	142, 225
AcsI	RAATTY	3 cut(s)	278, 500, 813
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	2 cut(s)	370, 843
AfiI	CCNNNNNNNGG	4 cut(s)	281, 646, 731, 895
AgsI	TTSAA	2 cut(s)	364, 535
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
AluBI	AGCT	3 cut(s)	523, 539, 744
AluI	AGCT	3 cut(s)	523, 539, 744
Alw21I	GWGCWC	1 cut(s)	479
Alw26I	GTCTC	2 cut(s)	402, 899
AlwI	GGATC	2 cut(s)	658, 688
AlwNI	CAGNNNCTG	1 cut(s)	688
Ama87I	CYCGRG	1 cut(s)	405
AoxI	GGCC	3 cut(s)	114, 142, 225
ApeKI	GCWGC	3 cut(s)	482, 520, 673
ApoI	RAATTY	3 cut(s)	278, 500, 813
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	3 cut(s)	90, 106, 873
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	1 cut(s)	817
AvaI	CYCGRG	1 cut(s)	405
BaeGI	GKGCMC	2 cut(s)	126, 406
BanI	GGYRCC	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	294
BauI	CACGAG	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	479
BbvI	GCAGC	3 cut(s)	494, 532, 685
BccI	CCATC	3 cut(s)	308, 767, 854
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	6 cut(s)	100, 134, 182, 216, 218, 252
BcoDI	GTCTC	2 cut(s)	402, 899
BfaI	CTAG	2 cut(s)	846, 922
BfmI	CTRYAG	1 cut(s)	480
BfoI	RGCGCY	1 cut(s)	874
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	4 cut(s)	145, 483, 521, 674
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	4 cut(s)	146, 484, 522, 675
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	843
BmsI	GCATC	1 cut(s)	757
Bpu1102I	GCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	817
Bsa29I	ATCGAT	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	402
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 646, 731, 895
Bse1I	ACTGG	2 cut(s)	315, 587
Bse3DI	GCAATG	2 cut(s)	205, 444
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	2 cut(s)	294, 907
BseLI	CCNNNNNNNGG	4 cut(s)	281, 646, 731, 895
BseMI	GCAATG	2 cut(s)	205, 444
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	2 cut(s)	315, 587
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	2 cut(s)	126, 406
BseXI	GCAGC	3 cut(s)	494, 532, 685
BseYI	CCCAGC	2 cut(s)	417, 780
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	2 cut(s)	90, 104
BshFI	GGCC	3 cut(s)	116, 144, 227
BshNI	GGYRCC	1 cut(s)	841
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	479
BsiHKCI	CYCGRG	1 cut(s)	405
BslFI	GGGAC	3 cut(s)	224, 721, 877
BslI	CCNNNNNNNGG	4 cut(s)	281, 646, 731, 895
BsmAI	GTCTC	2 cut(s)	402, 899
BsmFI	GGGAC	3 cut(s)	224, 721, 877
BsmI	GAATGC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	116, 144, 227
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	817
Bsp1286I	GDGCHC	4 cut(s)	126, 294, 406, 479
Bsp143I	GATC	4 cut(s)	351, 650, 693, 912
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	20, 145
BspANI	GGCC	3 cut(s)	116, 144, 227
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	2 cut(s)	90, 104
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	658, 688
BspT104I	TTCGAA	1 cut(s)	817
BspT107I	GGYRCC	1 cut(s)	841
BspTNI	GGTCTC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	205, 444
BsrI	ACTGG	2 cut(s)	315, 587
BssMI	GATC	4 cut(s)	351, 650, 693, 912
BssNAI	GTATAC	1 cut(s)	788
BssNI	GRCGYC	1 cut(s)	879
BssSI	CACGAG	1 cut(s)	119
Bst1107I	GTATAC	1 cut(s)	788
Bst2BI	CACGAG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	182, 493, 690
BstACI	GRCGYC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	372
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	3 cut(s)	61, 142, 241
BstDEI	CTNAG	2 cut(s)	107, 641
BstENI	CCTNNNNNAGG	1 cut(s)	893
BstF5I	GGATG	2 cut(s)	294, 907
BstFNI	CGCG	2 cut(s)	90, 104
BstH2I	RGCGCY	1 cut(s)	874
BstHHI	GCGC	3 cut(s)	90, 106, 873
BstKTI	GATC	4 cut(s)	354, 653, 696, 915
BstMAI	GTCTC	2 cut(s)	402, 899
BstMBI	GATC	4 cut(s)	351, 650, 693, 912
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	2 cut(s)	126, 406
BstUI	CGCG	2 cut(s)	90, 104
BstV1I	GCAGC	3 cut(s)	494, 532, 685
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BstZ17I	GTATAC	1 cut(s)	788
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	116, 144, 227
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	2 cut(s)	34, 582
BtsCI	GGATG	2 cut(s)	294, 907
BtsI	GCAGTG	2 cut(s)	241, 477
BtsIMutI	CAGTG	3 cut(s)	241, 322, 477
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	3 cut(s)	61, 142, 241
CaiI	CAGNNNCTG	1 cut(s)	688
CfoI	GCGC	3 cut(s)	90, 106, 873
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	192
CseI	GACGC	3 cut(s)	110, 665, 868
Csp6I	GTAC	2 cut(s)	369, 842
CviAII	CATG	7 cut(s)	85, 470, 513, 550, 704, 713, 838
CviQI	GTAC	2 cut(s)	369, 842
DdeI	CTNAG	2 cut(s)	107, 641
DpnI	GATC	4 cut(s)	353, 652, 695, 914
DpnII	GATC	4 cut(s)	351, 650, 693, 912
EaeI	YGGCCR	2 cut(s)	142, 225
Eco24I	GRGCYC	1 cut(s)	294
Eco31I	GGTCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	893
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRI	GAATTC	1 cut(s)	813
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	7 cut(s)	88, 473, 516, 553, 707, 716, 841
FaqI	GGGAC	3 cut(s)	224, 721, 877
FatI	CATG	7 cut(s)	84, 469, 512, 549, 703, 712, 837
FblI	GTMKAC	1 cut(s)	787
Fnu4HI	GCNGC	4 cut(s)	145, 483, 521, 674
FokI	GGATG	2 cut(s)	281, 914
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	145, 483, 521, 674
FspBI	CTAG	2 cut(s)	846, 922
GlaI	GCGC	3 cut(s)	89, 105, 872
GluI	GCNGC	4 cut(s)	145, 483, 521, 674
GsaI	CCCAGC	2 cut(s)	421, 784
HaeII	RGCGCY	1 cut(s)	874
HaeIII	GGCC	3 cut(s)	116, 144, 227
HgaI	GACGC	3 cut(s)	110, 665, 868
HhaI	GCGC	3 cut(s)	90, 106, 873
Hin1I	GRCGYC	1 cut(s)	879
Hin1II	CATG	7 cut(s)	88, 473, 516, 553, 707, 716, 841
Hin6I	GCGC	3 cut(s)	88, 104, 871
HinP1I	GCGC	3 cut(s)	88, 104, 871
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	1 cut(s)	709
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	546, 597, 788
Hpy188I	TCNGA	2 cut(s)	351, 462
Hpy188III	TCNNGA	6 cut(s)	275, 440, 532, 683, 810, 889
Hpy8I	GTNNAC	3 cut(s)	546, 597, 788
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	3 cut(s)	91, 818, 823
HpyCH4III	ACNGT	3 cut(s)	182, 493, 690
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	9 cut(s)	59, 198, 203, 243, 266, 449, 482, 617, 851
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	2 cut(s)	107, 641
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	879
Hsp92II	CATG	7 cut(s)	88, 473, 516, 553, 707, 716, 841
HspAI	GCGC	3 cut(s)	88, 104, 871
KpnI	GGTACC	1 cut(s)	845
Kzo9I	GATC	4 cut(s)	351, 650, 693, 912
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	494, 532, 685
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	2 cut(s)	846, 922
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	2 cut(s)	248, 493
MalI	GATC	4 cut(s)	353, 652, 695, 914
MboI	GATC	4 cut(s)	351, 650, 693, 912
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	4 cut(s)	126, 294, 406, 479
MluCI	AATT	4 cut(s)	278, 500, 792, 813
MlyI	GAGTC	1 cut(s)	703
MnlI	CCTC	9 cut(s)	58, 128, 160, 199, 281, 465, 468, 601, 892
MslI	CAYNNNNRTG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	449
MvnI	CGCG	2 cut(s)	90, 104
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	4 cut(s)	351, 650, 693, 912
NlaIII	CATG	7 cut(s)	88, 473, 516, 553, 707, 716, 841
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	817
PctI	GAATGC	1 cut(s)	449
PkrI	GCNGC	4 cut(s)	146, 484, 522, 675
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	372
PspFI	CCCAGC	2 cut(s)	417, 780
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	688
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	2 cut(s)	370, 843
RsaNI	GTAC	2 cut(s)	369, 842
RseI	CAYNNNNRTG	1 cut(s)	89
SatI	GCNGC	4 cut(s)	145, 483, 521, 674
Sau3AI	GATC	4 cut(s)	351, 650, 693, 912
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	703
SduI	GDGCHC	4 cut(s)	126, 294, 406, 479
SetI	ASST	9 cut(s)	374, 430, 525, 541, 612, 622, 722, 746, 847
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	480
SfuI	TTCGAA	1 cut(s)	817
SmiMI	CAYNNNNRTG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	278, 500, 792, 813
SsiI	CCGC	2 cut(s)	20, 145
SspMI	CTAG	2 cut(s)	846, 922
TaaI	ACNGT	3 cut(s)	182, 493, 690
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	7 cut(s)	95, 186, 192, 660, 692, 817, 911
TasI	AATT	4 cut(s)	278, 500, 792, 813
TauI	GCSGC	1 cut(s)	147
TscAI	CASTG	3 cut(s)	241, 322, 484
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	482, 520, 673
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	3 cut(s)	241, 322, 484
XagI	CCTNNNNNAGG	1 cut(s)	893
XapI	RAATTY	3 cut(s)	278, 500, 813
XceI	RCATGY	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	787
XspI	CTAG	2 cut(s)	846, 922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.