Rmu_sc0000606.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000606.1
N/A
Physical Location & Seq
Forward (+)
35112 .. 35435
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
atgtttctgaggcgacatattgattctagcctacgctgggagtaccttcagttgaagacacccaaagaattgtgggatgcccttaatgaacgttttgggaacattcatgaaactttgctcctagaactggccgttcagtggaatggaatctgcttgcttgactacaaaagggtcaatgacttcaacaaggacatgttgcggctaaaggcacatctcaatttctgtggaagggaaatcacagaagatgatatgatctacaagactctttccacctttcctacttcagcgcttatactaaaagaatcacaaccttcaataagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

12.7

Weight (kDa)

6.28

Isoelectric Point (pI)

63.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 199
AclI AACGTT 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 129
AcuI CTGAAG 2 cut(s) 32, 267
AfaI GTAC 1 cut(s) 44
AfeI AGCGCT 1 cut(s) 288
AfiI CCNNNNNNNGG 3 cut(s) 37, 127, 138
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 55, 184, 315
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
Aor51HI AGCGCT 1 cut(s) 288
AoxI GGCC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 116
BfaI CTAG 2 cut(s) 27, 122
BfoI RGCGCY 1 cut(s) 290
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 127, 138
Bse1I ACTGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 37, 127, 138
BseNI ACTGG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 37, 127, 138
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 131
BspHI TCATGA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 132
BssMI GATC 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 107, 193
CviJI RGCY 4 cut(s) 30, 131, 202, 321
CviKI_1 RGCY 4 cut(s) 30, 131, 202, 321
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 8
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
EaeI YGGCCR 1 cut(s) 129
Eco47III AGCGCT 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 32, 267
FaeI CATG 2 cut(s) 110, 196
FaiI YATR 5 cut(s) 18, 108, 194, 251, 293
FatI CATG 2 cut(s) 106, 192
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 2 cut(s) 27, 122
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 289
Hin1II CATG 2 cut(s) 110, 196
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HinfI GANTC 4 cut(s) 23, 147, 262, 302
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 3 cut(s) 56, 222, 321
HpyCH4IV ACGT 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 110, 196
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 2 cut(s) 22, 113
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 27, 122
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 67, 254
MluCI AATT 2 cut(s) 68, 217
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 1 cut(s) 3
MseI TTAA 1 cut(s) 84
NdeII GATC 1 cut(s) 252
NlaIII CATG 2 cut(s) 110, 196
NspI RCATGY 1 cut(s) 196
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 192
PfeI GAWTC 3 cut(s) 23, 147, 302
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 36
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 1 cut(s) 252
SchI GAGTC 1 cut(s) 256
SetI ASST 5 cut(s) 48, 94, 275, 313, 323
SfaNI GCATC 1 cut(s) 67
Sse9I AATT 2 cut(s) 68, 217
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 27, 122
TaiI ACGT 1 cut(s) 94
TasI AATT 2 cut(s) 68, 217
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 3 cut(s) 23, 147, 302
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 95, 102, 123
TspRI CASTG 1 cut(s) 143
XceI RCATGY 1 cut(s) 196
XspI CTAG 2 cut(s) 27, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.