Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000607.1

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

192153 .. 192844

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggaaccacgaactctgctactaatggagttacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccgcaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttaatctgcaacaatatgggcagatcgaggacaagaacgtcttcttttgttctactgatgatggtcggtccattgatctaaactttggttccactggttctactagtactgacagatccattgatctaaattttgggtcacgtgtcggctatggtgttgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactattccccatgcacggtgagaacgtctttggcaacatgaagactacttctgagggaggtagcggctatggctactactccgatggctgggacgacaacaatggtggttcttgcatttctcttaagcttagtctctactcctccggagctgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

198

Amino Acids

21.76

Weight (kDa)

4.37

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	575
AciI	CCGC	2 cut(s)	129, 495
AclWI	GGATC	2 cut(s)	327, 388
AcsI	RAATTY	1 cut(s)	346
AcvI	CACGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	117, 446, 519
AflII	CTTAAG	1 cut(s)	554
AflIII	ACRYGT	1 cut(s)	358
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	206, 422
AhlI	ACTAGT	1 cut(s)	320
AjnI	CCWGG	2 cut(s)	153, 411
AluBI	AGCT	3 cut(s)	160, 559, 581
AluI	AGCT	3 cut(s)	160, 559, 581
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	327, 388
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	74, 581
ApoI	RAATTY	1 cut(s)	346
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	257, 426
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	401, 461
AvaII	GGWCC	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	359
BbsI	GAAGAC	2 cut(s)	250, 479
BbvI	GCAGC	2 cut(s)	86, 568
BccI	CCATC	3 cut(s)	272, 371, 509
BciT130I	CCWGG	2 cut(s)	155, 413
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	569
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 496, 582
BlsI	GCNGC	3 cut(s)	76, 497, 583
BmcAI	AGTACT	1 cut(s)	325
Bme1390I	CCNGG	3 cut(s)	79, 155, 413
Bme18I	GGWCC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	6, 307
BmrFI	CCNGG	3 cut(s)	79, 155, 413
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	2 cut(s)	250, 479
BpmI	CTGGAG	2 cut(s)	137, 177
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	383
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	117, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 446, 519
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	155, 413
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	117, 446, 519
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	3 cut(s)	68, 414, 562
BseXI	GCAGC	2 cut(s)	86, 568
BseYI	CCCAGC	2 cut(s)	39, 519
BshFI	GGCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	383
BsiSI	CCGG	3 cut(s)	78, 118, 576
BslFI	GGGAC	1 cut(s)	536
BslI	CCNNNNNNNGG	3 cut(s)	117, 446, 519
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	1 cut(s)	536
BsnI	GGCC	1 cut(s)	106
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
BspACI	CCGC	2 cut(s)	129, 495
BspANI	GGCC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	383
BspEI	TCCGGA	1 cut(s)	575
BspLI	GGNNCC	2 cut(s)	6, 307
BspPI	GGATC	2 cut(s)	327, 388
BspTI	CTTAAG	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
Bst2UI	CCWGG	2 cut(s)	155, 413
Bst4CI	ACNGT	1 cut(s)	449
BstAFI	CTTAAG	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	359
BstDEI	CTNAG	4 cut(s)	143, 483, 560, 594
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	8 cut(s)	139, 213, 243, 295, 335, 343, 383, 387
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 501, 590
BstNI	CCWGG	2 cut(s)	155, 413
BstSCI	CCNGG	3 cut(s)	77, 153, 411
BstV1I	GCAGC	2 cut(s)	86, 568
BstV2I	GAAGAC	2 cut(s)	250, 479
BstX2I	RGATCY	2 cut(s)	210, 332
BstYI	RGATCY	2 cut(s)	210, 332
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	383
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	324
CspAI	ACCGGT	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	4 cut(s)	388, 442, 469, 589
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	143, 483, 560, 594
DpnI	GATC	8 cut(s)	138, 212, 242, 294, 334, 342, 382, 386
DpnII	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	153, 411
FaeI	CATG	4 cut(s)	391, 445, 472, 592
FaiI	YATR	8 cut(s)	168, 234, 369, 389, 443, 470, 501, 590
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FaqI	GGGAC	1 cut(s)	536
FatI	CATG	4 cut(s)	387, 441, 468, 588
FauI	CCCGC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	75, 496, 582
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	75, 496, 582
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	3 cut(s)	75, 496, 582
GsaI	CCCAGC	2 cut(s)	43, 523
GsuI	CTGGAG	2 cut(s)	137, 177
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	78, 118, 576
Hin1II	CATG	4 cut(s)	391, 445, 472, 592
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	3 cut(s)	78, 118, 576
HphI	GGTGA	2 cut(s)	401, 461
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	484, 514
Hpy188III	TCNNGA	3 cut(s)	194, 206, 576
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	3 cut(s)	255, 358, 456
HpyCH4V	TGCA	3 cut(s)	226, 445, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 501, 590
HpyF3I	CTNAG	4 cut(s)	143, 483, 560, 594
HpySE526I	ACGT	3 cut(s)	255, 358, 456
Hsp92II	CATG	4 cut(s)	391, 445, 472, 592
Kpn2I	TCCGGA	1 cut(s)	575
Kzo9I	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
LmnI	GCTCC	2 cut(s)	157, 578
Lsp1109I	GCAGC	2 cut(s)	86, 568
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	3 cut(s)	255, 358, 456
MaeIII	GTNAC	2 cut(s)	30, 354
MalI	GATC	8 cut(s)	138, 212, 242, 294, 334, 342, 382, 386
MboI	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
MboII	GAAGA	2 cut(s)	250, 484
MflI	RGATCY	2 cut(s)	210, 332
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	118
MnlI	CCTC	9 cut(s)	46, 49, 53, 161, 238, 392, 478, 482, 583
MroI	TCCGGA	1 cut(s)	575
MroXI	GAANNNNTTC	2 cut(s)	257, 426
MseI	TTAA	3 cut(s)	180, 219, 555
MspCI	CTTAAG	1 cut(s)	554
MspI	CCGG	3 cut(s)	78, 118, 576
MspR9I	CCNGG	3 cut(s)	79, 155, 413
MvaI	CCWGG	2 cut(s)	155, 413
MwoI	GCNNNNNNNGC	3 cut(s)	103, 501, 590
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
NlaIII	CATG	4 cut(s)	391, 445, 472, 592
NlaIV	GGNNCC	2 cut(s)	6, 307
NmuCI	GTSAC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PdmI	GAANNNNTTC	2 cut(s)	257, 426
PfeI	GAWTC	2 cut(s)	147, 202
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	76, 497, 583
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	359
PmlI	CACGTG	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	153, 411
PspCI	CACGTG	1 cut(s)	359
PspFI	CCCAGC	2 cut(s)	39, 519
PspGI	CCWGG	2 cut(s)	153, 411
PspN4I	GGNNCC	2 cut(s)	6, 307
PspPI	GGNCC	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	210, 332
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	3 cut(s)	180, 219, 555
SatI	GCNGC	3 cut(s)	75, 496, 582
Sau3AI	GATC	8 cut(s)	136, 210, 240, 292, 332, 340, 380, 384
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	325
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	79, 155, 413
SetI	ASST	8 cut(s)	162, 177, 258, 361, 459, 493, 561, 583
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	129, 495
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	77, 153, 411
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	3 cut(s)	258, 361, 459
TaqI	TCGA	2 cut(s)	243, 383
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	346
TatI	WGTACW	1 cut(s)	323
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	3 cut(s)	180, 219, 555
Tru9I	TTAA	3 cut(s)	180, 219, 555
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	74, 581
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	316
Vha464I	CTTAAG	1 cut(s)	554
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	1 cut(s)	346
XmnI	GAANNNNTTC	2 cut(s)	257, 426
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.