Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000616.1

Orthogroup ID

OG0031087

Physical Location & Seq

Genomic Coordinates Reverse (-)

120734 .. 122162

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atgagggaggaaatgagggaccaattggtgtaccgtgagggggaagaggaggcggagaaggagaaggacccgcaacgctgtcgtattgggtttcctcataagaggcttgtcgtcgtgggttatgctcttacgtctaagaagaccaagagcttcttgcagcccaagcttgaaggtttagctaggaacaaggggatattatttgttgctattgatcataacaggtctctttcggatcaaggcccttttgacattgtgttgcataagctttcgggaagagactggcgccagattcttgagagtggttccctttccttcgtcacgaaccatgactcaatatttgaggtcgaggcctcaagcttccagcaagtgatgatgtttctacttccatggccatctagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

133

Amino Acids

15.37

Weight (kDa)

6.91

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	38 - 100	1.3e-26	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031087)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000616.1_g000019 Rmu_sc0004780.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	2 cut(s)	53, 71
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	170
AluBI	AGCT	6 cut(s)	150, 166, 179, 265, 357, 399
AluI	AGCT	6 cut(s)	150, 166, 179, 265, 357, 399
Alw26I	GTCTC	2 cut(s)	228, 270
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	3 cut(s)	238, 348, 389
ApeKI	GCWGC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	19, 67, 239
AvaII	GGWCC	2 cut(s)	19, 67
BalI	TGGCCA	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	400
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	228, 270
BfaI	CTAG	2 cut(s)	180, 396
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
Bme18I	GGWCC	2 cut(s)	19, 67
BmgT120I	GGNCC	3 cut(s)	19, 67, 239
BmiI	GGNNCC	4 cut(s)	20, 69, 284, 304
BpiI	GAAGAC	1 cut(s)	146
BpuEI	CTTGAG	2 cut(s)	314, 337
BsaHI	GRCGYC	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	386
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	3 cut(s)	240, 350, 391
BshNI	GGYRCC	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	2 cut(s)	228, 270
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	240, 350, 391
Bso31I	GGTCTC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	211, 232
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	2 cut(s)	53, 71
BspANI	GGCC	3 cut(s)	240, 350, 391
BspLI	GGNNCC	4 cut(s)	20, 69, 284, 304
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	211, 232
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	2 cut(s)	39, 268
BstACI	GRCGYC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	214, 235
BstMAI	GTCTC	2 cut(s)	228, 270
BstMBI	GATC	2 cut(s)	211, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	240, 350, 391
BtgI	CCRYGG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	3 cut(s)	19, 67, 239
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	326, 387
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	135
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	2 cut(s)	213, 234
DpnII	GATC	2 cut(s)	211, 232
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	39, 268
EarI	CTCTTC	2 cut(s)	39, 268
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	19, 67
EcoO109I	RGGNCCY	2 cut(s)	67, 239
EcoT14I	CCWWGG	1 cut(s)	386
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	329, 390
FaiI	YATR	6 cut(s)	99, 123, 216, 261, 327, 388
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	2 cut(s)	325, 386
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	180, 396
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	3 cut(s)	240, 350, 391
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	329, 390
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	3 cut(s)	164, 263, 355
HinfI	GANTC	2 cut(s)	289, 329
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	3 cut(s)	270, 293, 319
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	52, 58, 164, 322
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	157, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	329, 390
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 232
LpnPI	CCDG	4 cut(s)	205, 265, 299, 374
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	180, 396
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	2 cut(s)	213, 234
MboI	GATC	2 cut(s)	211, 232
MboII	GAAGA	3 cut(s)	56, 151, 285
MfeI	CAATTG	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	391
Mly113I	GGCGCC	1 cut(s)	283
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	9 cut(s)	9, 31, 40, 43, 96, 105, 334, 340, 361
Mox20I	TGGCCA	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	391
Msp20I	TGGCCA	1 cut(s)	391
MunI	CAATTG	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	211, 232
NlaIII	CATG	2 cut(s)	329, 390
NlaIV	GGNNCC	4 cut(s)	20, 69, 284, 304
NmuCI	GTSAC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	1 cut(s)	323
PluTI	GGCGCC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	20, 69, 284, 304
PspPI	GGNCC	3 cut(s)	19, 67, 239
PspPPI	RGGWCCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	211, 232
Sau96I	GGNCC	3 cut(s)	19, 67, 239
SchI	GAGTC	1 cut(s)	323
SfoI	GGCGCC	1 cut(s)	284
SinI	GGWCC	2 cut(s)	19, 67
SmlI	CTYRAG	2 cut(s)	293, 352
SmoI	CTYRAG	2 cut(s)	293, 352
Sse9I	AATT	1 cut(s)	23
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	2 cut(s)	53, 71
SspDI	GGCGCC	1 cut(s)	282
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	2 cut(s)	180, 396
StuI	AGGCCT	1 cut(s)	350
StyI	CCWWGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	23
TfiI	GAWTC	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	19, 67
XspI	CTAG	2 cut(s)	180, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.