Rmu_sc0000617.1_g000008
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000617.1
N/A
Physical Location & Seq
Reverse (-)
52174 .. 53145
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000617.1_g000008.1.cds

Sequence Viewer

Length: 972 bp
atgaccattacatatggtcttgacagaaagggaaatactattggcggaaagcacgttcttatattttatcttggtggtggtacattcgatgtttccctcctcaagattgaagagagaatttttcaggtgacagctacagctggagatactcatcttggaggtgaagattttgacaatagaatggtgaatcatttcgtacaagagttcaagagaaaacatgaaaaatatatcagtaagaaccccaaagcactaaggagattgaaaacatcttgtgaaagagcaaagataactctttcttctaccactcaaactaccattgagattgattctttatttgaagatattgacttttacaccacaataacaagagcaaaatttgaggatatcaacttggatctctttgtaaaatgtatggagcctgtggacaagtgtttgagagatatgctgaaatggacaaaagcattgttcgtgatgttgttcttgttgggggatctactagaatcccaaagatacgacaactattacaagatttttttaatggtaaggagcttaatttgcaagagcatcaatcctgatggattggttgcatatggtgcggccgtacaagctgcaattttgagcgttgagggatataatgagaaagttcaagacttgctattgttggatgtcactccactttctcttggttgcgaggattataaaggacatatgtctattgttgtcccaagaaacactaccatccctaccaagaaacaacgatctgtcacaaccgtcgtaactgcacaatcatgtatcaagtttgatgtgtatgagggggaaagtccaatagccaaacagaacagatggttgggtacatttaagctttcacacatccgtcctgcttcaaagcgagttcctgatatcagcatttgctttgagattgatgccaatggaatcttgattgtctccgcgcgaggaaaaatcaacaaataa
Functional Annotation

Protein Analysis

323

Amino Acids

36.56

Weight (kDa)

8.81

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AccII CGCG 2 cut(s) 950, 952
AciI CCGC 3 cut(s) 45, 596, 948
AclWI GGATC 2 cut(s) 402, 498
AcoI YGGCCR 1 cut(s) 597
AcsI RAATTY 2 cut(s) 117, 374
AfaI GTAC 4 cut(s) 82, 198, 603, 853
AgsI TTSAA 6 cut(s) 110, 208, 262, 338, 647, 885
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 5 cut(s) 134, 140, 549, 608, 862
AluI AGCT 5 cut(s) 134, 140, 549, 608, 862
Alw26I GTCTC 1 cut(s) 949
AlwI GGATC 2 cut(s) 402, 498
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 117, 374
Asp700I GAANNNNTTC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 952
AsuHPI GGTGA 3 cut(s) 139, 173, 196
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 569, 746, 837
BceAI ACGGC 1 cut(s) 584
BcoDI GTCTC 1 cut(s) 949
BfaI CTAG 1 cut(s) 497
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 597, 609
BlsI GCNGC 2 cut(s) 598, 610
BmiI GGNNCC 1 cut(s) 417
BmsI GCATC 2 cut(s) 573, 913
BoxI GACNNNNGTC 1 cut(s) 709
BpmI CTGGAG 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 86
BsaBI GATNNNNATC 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 150
BseGI GGATG 3 cut(s) 670, 738, 870
BseJI GATNNNNATC 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 89
BseX3I CGGCCG 1 cut(s) 597
BseXI GCAGC 1 cut(s) 595
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 2 cut(s) 950, 952
Bsh1285I CGRYCG 1 cut(s) 600
BshFI GGCC 1 cut(s) 599
BsiEI CGRYCG 1 cut(s) 600
BslFI GGGAC 1 cut(s) 707
BsmAI GTCTC 1 cut(s) 949
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 1 cut(s) 599
Bsp143I GATC 3 cut(s) 394, 490, 758
BspACI CCGC 3 cut(s) 45, 596, 948
BspANI GGCC 1 cut(s) 599
BspFNI CGCG 2 cut(s) 950, 952
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 2 cut(s) 402, 498
BssMI GATC 3 cut(s) 394, 490, 758
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 593
BstDEI CTNAG 1 cut(s) 251
BstF5I GGATG 3 cut(s) 670, 738, 870
BstFNI CGCG 2 cut(s) 950, 952
BstHHI GCGC 1 cut(s) 952
BstKTI GATC 3 cut(s) 397, 493, 761
BstMAI GTCTC 1 cut(s) 949
BstMBI GATC 3 cut(s) 394, 490, 758
BstMCI CGRYCG 1 cut(s) 600
BstMWI GCNNNNNNNGC 3 cut(s) 555, 593, 605
BstPAI GACNNNNGTC 1 cut(s) 709
BstSFI CTRYAG 1 cut(s) 135
BstUI CGCG 2 cut(s) 950, 952
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 2 cut(s) 394, 490
BstYI RGATCY 2 cut(s) 394, 490
BstZI CGGCCG 1 cut(s) 597
BsuRI GGCC 1 cut(s) 599
BtsCI GGATG 3 cut(s) 670, 738, 870
CfoI GCGC 1 cut(s) 952
Csp6I GTAC 4 cut(s) 81, 197, 602, 852
CviAII CATG 2 cut(s) 218, 789
CviJI RGCY 8 cut(s) 134, 140, 418, 549, 599, 608, 830, 862
CviKI_1 RGCY 8 cut(s) 134, 140, 418, 549, 599, 608, 830, 862
CviQI GTAC 4 cut(s) 81, 197, 602, 852
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 396, 492, 760
DpnII GATC 3 cut(s) 394, 490, 758
EaeI YGGCCR 1 cut(s) 597
EagI CGGCCG 1 cut(s) 597
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 60
EclXI CGGCCG 1 cut(s) 597
Eco32I GATATC 2 cut(s) 385, 901
Eco52I CGGCCG 1 cut(s) 597
EcoRV GATATC 2 cut(s) 385, 901
FaeI CATG 2 cut(s) 221, 792
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 217, 788
FauNDI CATATG 3 cut(s) 13, 589, 708
Fnu4HI GCNGC 2 cut(s) 597, 609
FokI GGATG 3 cut(s) 677, 725, 857
Fsp4HI GCNGC 2 cut(s) 597, 609
FspBI CTAG 1 cut(s) 497
GlaI GCGC 1 cut(s) 951
GluI GCNGC 2 cut(s) 597, 609
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 1 cut(s) 599
HhaI GCGC 1 cut(s) 952
Hin1II CATG 2 cut(s) 221, 792
Hin6I GCGC 1 cut(s) 950
HinP1I GCGC 1 cut(s) 950
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 4 cut(s) 187, 326, 500, 933
HphI GGTGA 3 cut(s) 139, 173, 196
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 8 cut(s) 20, 103, 208, 469, 572, 647, 896, 937
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 1 cut(s) 776
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 558, 587, 611, 782
HpyF10VI GCNNNNNNNGC 3 cut(s) 555, 593, 605
HpyF3I CTNAG 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 221, 792
HspAI GCGC 1 cut(s) 950
Kzo9I GATC 3 cut(s) 394, 490, 758
LmnI GCTCC 2 cut(s) 415, 546
LpnPI CCDG 6 cut(s) 110, 126, 432, 585, 891, 909
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 2 cut(s) 573, 913
MaeI CTAG 1 cut(s) 497
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 4 cut(s) 127, 667, 763, 775
MalI GATC 3 cut(s) 396, 492, 760
MboI GATC 3 cut(s) 394, 490, 758
MboII GAAGA 4 cut(s) 122, 176, 288, 350
MflI RGATCY 2 cut(s) 394, 490
MluCI AATT 4 cut(s) 117, 374, 552, 612
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 8 cut(s) 107, 110, 152, 373, 619, 685, 805, 947
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 3 cut(s) 536, 551, 858
MslI CAYNNNNRTG 1 cut(s) 787
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 2 cut(s) 950, 952
MwoI GCNNNNNNNGC 3 cut(s) 555, 593, 605
NdeI CATATG 3 cut(s) 13, 589, 708
NdeII GATC 3 cut(s) 394, 490, 758
NlaIII CATG 2 cut(s) 221, 792
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 3 cut(s) 127, 667, 763
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 4 cut(s) 187, 326, 500, 933
PkrI GCNGC 2 cut(s) 598, 610
PshAI GACNNNNGTC 1 cut(s) 709
PsiI TTATAA 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 417
PsuI RGATCY 2 cut(s) 394, 490
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 4 cut(s) 82, 198, 603, 853
RsaNI GTAC 4 cut(s) 81, 197, 602, 852
RseI CAYNNNNRTG 1 cut(s) 787
SaqAI TTAA 3 cut(s) 536, 551, 858
SatI GCNGC 2 cut(s) 597, 609
Sau3AI GATC 3 cut(s) 394, 490, 758
SetI ASST 8 cut(s) 57, 129, 136, 142, 163, 551, 610, 864
SfaNI GCATC 2 cut(s) 573, 913
SfcI CTRYAG 1 cut(s) 135
SmiMI CAYNNNNRTG 1 cut(s) 787
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 117, 374, 552, 612
SsiI CCGC 3 cut(s) 45, 596, 948
SspMI CTAG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 772
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 87
TasI AATT 4 cut(s) 117, 374, 552, 612
TauI GCSGC 1 cut(s) 599
TfiI GAWTC 4 cut(s) 187, 326, 500, 933
Tru1I TTAA 3 cut(s) 536, 551, 858
Tru9I TTAA 3 cut(s) 536, 551, 858
TseFI GTSAC 3 cut(s) 127, 667, 763
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 3 cut(s) 127, 667, 763
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 863
XapI RAATTY 2 cut(s) 117, 374
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.